2Y1R | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	140
structure length	140
Chain Sequence	FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 140 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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140 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Bacillus subtilis
publication title	Structure and Mechanism of the Hexameric Meca-Clpc Molecular Machine. pubmed doi rcsb
molecule keywords	NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB
total genus	54
structure length	140
sequence length	140
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2010-12-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02861	Clp_N	Clp amino terminal domain, pathogenicity island component

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1780.10	Mainly Alpha	Orthogonal Bundle	Double Clp-N motif	Clp, N-terminal domain	2y1rA00

2Y1QA 3ZRJA 3WDDA 3PXGA 3WDEA 4HH5A 3ZRIA 3WDCA 1R6BX 3FH2A 4P15A 2Y1RA 4IRFA 4UQWA 1LZWB 5HBNA 1QVRA 1R6OA 1R6QA 1K6KA 1MBXA 1MBVA 2K77A 4Y0BA 1R6CX 3FESA 1KHYA 1MBUA 4IODA 1KSFX 5GUIA 3WDBA 4HH6A 1MG9B 4Y0CA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2Y1Q A;  3ZRJ A;  3WDD A;  3PXG A;  3WDE A;  4HH5 A;  3ZRI A;  3WDC A;  1R6B X;  3FH2 A;  4P15 A;  2Y1R A;  4IRF A;  4UQW A;  1LZW B;  5HBN A;  1QVR A;  1R6O A;  1R6Q A;  1K6K A;  1MBX A;  1MBV A;  2K77 A;  4Y0B A;  1R6C X;  3FES A;  1KHY A;  1MBU A;  4IOD A;  1KSF X;  5GUI A;  3WDB A;  4HH6 A;  1MG9 B;  4Y0C A; 
#chains in the Genus database with same CATH topology
 2Y1Q A;  3ZRJ A;  3WDD A;  3PXG A;  3WDE A;  4HH5 A;  3ZRI A;  3WDC A;  1R6B X;  3FH2 A;  4P15 A;  2Y1R A;  4IRF A;  4UQW A;  1LZW B;  5HBN A;  1QVR A;  1R6O A;  1R6Q A;  1K6K A;  1MBX A;  1MBV A;  2K77 A;  4Y0B A;  1R6C X;  3FES A;  1KHY A;  1MBU A;  4IOD A;  1KSF X;  5GUI A;  3WDB A;  4HH6 A;  1MG9 B;  4Y0C A; 
#chains in the Genus database with same CATH homology
 2Y1Q A;  3ZRJ A;  3WDD A;  3PXG A;  3WDE A;  4HH5 A;  3ZRI A;  3WDC A;  1R6B X;  3FH2 A;  4P15 A;  2Y1R A;  4IRF A;  4UQW A;  1LZW B;  5HBN A;  1QVR A;  1R6O A;  1R6Q A;  1K6K A;  1MBX A;  1MBV A;  2K77 A;  4Y0B A;  1R6C X;  3FES A;  1KHY A;  1MBU A;  4IOD A;  1KSF X;  5GUI A;  3WDB A;  4HH6 A;  1MG9 B;  4Y0C A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Y1RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations