3LAZ | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	96
structure length	96
Chain Sequence	AMANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cff70b255a2e70cf143d7b4/pdb.gz): 2963 ms

reading 96 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

96 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:95});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	The crystal structure of the N-terminal domain of D-galactarate dehydratase from Escherichia coli CFT073 rcsb
molecule keywords	D-galactarate dehydratase
total genus	18
structure length	96
sequence length	96
chains with identical sequence	B
ec nomenclature	ec 4.2.1.42: Galactarate dehydratase.
pdb deposition date	2010-01-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08666	SAF	SAF domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.30	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Type Iii Antifreeze Protein Isoform Hplc 12	3lazA01

3K3SA 3LAZA
chains in the Genus database with same CATH superfamily

1EKLA 3G8RA 6MSIA 1B7JA 1AMEA 3QF6A 1XUUA 1UCSA 1MSIA 1JABA 3LAZA 3AMEA 3MSIA 3RDNA 5MSIA 1KDEA 3CM4A 1C89A 1WVOA 1B7IA 8AMEA 4IPIA 9AMEA 2JIAA 6AMEA 2LX2A 1KDFA 3FRNA 4IPJA 1XUZA 2LX3A 1VLIA 2ZDRA 1MSJA 7MSIA 7AMEA 1HG7A 9MSIA 4UR4A 1B7KA 2MSIA 3K3SA 1OPSA 4AMEA 2SPGA 3NLAA 2WQPA 4NY6A 2MSJA 1C8AA 2AMEA 1GZIA 8MSIA 4UR6A 4MSIA
chains in the Genus database with same CATH topology

3K3SA 3LAZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3K3S A;  3LAZ A; 
#chains in the Genus database with same CATH topology
 1EKL A;  3G8R A;  6MSI A;  1B7J A;  1AME A;  3QF6 A;  1XUU A;  1UCS A;  1MSI A;  1JAB A;  3LAZ A;  3AME A;  3MSI A;  3RDN A;  5MSI A;  1KDE A;  3CM4 A;  1C89 A;  1WVO A;  1B7I A;  8AME A;  4IPI A;  9AME A;  2JIA A;  6AME A;  2LX2 A;  1KDF A;  3FRN A;  4IPJ A;  1XUZ A;  2LX3 A;  1VLI A;  2ZDR A;  1MSJ A;  7MSI A;  7AME A;  1HG7 A;  9MSI A;  4UR4 A;  1B7K A;  2MSI A;  3K3S A;  1OPS A;  4AME A;  2SPG A;  3NLA A;  2WQP A;  4NY6 A;  2MSJ A;  1C8A A;  2AME A;  1GZI A;  8MSI A;  4UR6 A;  4MSI A; 
#chains in the Genus database with same CATH homology
 3K3S A;  3LAZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3LAZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations