3OUR | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	150
structure length	150
Chain Sequence	AIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSGSVVVGETPVLRVTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 150 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase/transferase
source organism	Vibrio vulnificus
publication title	FrsA functions as a cofactor-independent decarboxylase to control metabolic flux pubmed doi rcsb
molecule keywords	UPF0255 protein VV1_0328
total genus	35
structure length	150
sequence length	150
chains with identical sequence	D, F, H
ec nomenclature
pdb deposition date	2010-09-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	3ourB00

4ZYBA 2B13A 1F3ZA 2B44A 2HSIA 1GLDF 4LXCA 4RNYA 1GLEF 3OURB 3TUFB 1GPRA 3NYYA 3SLUA 3UZ0B 2F3GA 1GGRA 2B0PA 4QP5A 1QWYA 1GLBF 3IT7A 2MP0B 4JBWM 4QPBA 4RNZA 5B0HA 5KVPA 2GPRA 3IT5A 1GLAF 1F3GA 1O2FA 1AX3A 4BH5A 1GLCF 2GU1A 3CSQA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A; 
#chains in the Genus database with same CATH topology
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A; 
#chains in the Genus database with same CATH homology
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OURB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN