3UZ0 | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	143
structure length	143
Chain Sequence	NVAMPVVDSENVSVVKKFYETDAAKEEKEAALVTYNNTYSLSKGIDLAEKDGKDFDVSASLSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVSVEQGDKVKQNQVIGKSGKNLYSEDSGNHVHFEIRKDGVAMNPLNFM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d033e46faf1fe93d6bff9cb/pdb.gz): 1444 ms

reading 143 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

143 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:142});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Bacillus subtilis
publication title	Structure of the basal components of a bacterial transporter. pubmed doi rcsb
molecule keywords	Stage III sporulation protein AH
total genus	26
structure length	143
sequence length	143
chains with identical sequence	D
ec nomenclature
pdb deposition date	2011-12-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01551	Peptidase_M23	Peptidase family M23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	3uz0B00

2F3GA 4JBWM 4ZYBA 1O2FA 4BH5A 3OURB 1QWYA 3IT5A 3CSQA 3SLUA 2HSIA 1GLBF 3UZ0B 3NYYA 4RNYA 5KVPA 1F3ZA 2B0PA 1GPRA 2GU1A 1GLAF 1F3GA 4LXCA 3IT7A 4QP5A 1GGRA 1GLDF 1GLEF 1GLCF 4QPBA 2GPRA 3TUFB 2B44A 5B0HA 2MP0B 1AX3A 2B13A 4RNZA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2F3G A;  4JBW M;  4ZYB A;  1O2F A;  4BH5 A;  3OUR B;  1QWY A;  3IT5 A;  3CSQ A;  3SLU A;  2HSI A;  1GLB F;  3UZ0 B;  3NYY A;  4RNY A;  5KVP A;  1F3Z A;  2B0P A;  1GPR A;  2GU1 A;  1GLA F;  1F3G A;  4LXC A;  3IT7 A;  4QP5 A;  1GGR A;  1GLD F;  1GLE F;  1GLC F;  4QPB A;  2GPR A;  3TUF B;  2B44 A;  5B0H A;  2MP0 B;  1AX3 A;  2B13 A;  4RNZ A; 
#chains in the Genus database with same CATH topology
 2F3G A;  4JBW M;  4ZYB A;  1O2F A;  4BH5 A;  3OUR B;  1QWY A;  3IT5 A;  3CSQ A;  3SLU A;  2HSI A;  1GLB F;  3UZ0 B;  3NYY A;  4RNY A;  5KVP A;  1F3Z A;  2B0P A;  1GPR A;  2GU1 A;  1GLA F;  1F3G A;  4LXC A;  3IT7 A;  4QP5 A;  1GGR A;  1GLD F;  1GLE F;  1GLC F;  4QPB A;  2GPR A;  3TUF B;  2B44 A;  5B0H A;  2MP0 B;  1AX3 A;  2B13 A;  4RNZ A; 
#chains in the Genus database with same CATH homology
 2F3G A;  4JBW M;  4ZYB A;  1O2F A;  4BH5 A;  3OUR B;  1QWY A;  3IT5 A;  3CSQ A;  3SLU A;  2HSI A;  1GLB F;  3UZ0 B;  3NYY A;  4RNY A;  5KVP A;  1F3Z A;  2B0P A;  1GPR A;  2GU1 A;  1GLA F;  1F3G A;  4LXC A;  3IT7 A;  4QP5 A;  1GGR A;  1GLD F;  1GLE F;  1GLC F;  4QPB A;  2GPR A;  3TUF B;  2B44 A;  5B0H A;  2MP0 B;  1AX3 A;  2B13 A;  4RNZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3UZ0B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations