4EPEB

Final urease structure for radiation damage experiment at 300 k
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title Spatial distribution of radiation damage to crystalline proteins at 25-300 K.
pubmed doi rcsb
molecule keywords Urease subunit alpha
total genus 18
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2012-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 4epeB00
1E9YA 4GY7A 1EJWB 1A5KB 1UBPB 5A6TB 1FWDB 4UBPB 1EJXB 1FWIB 4G7EA 4Z42B 1FWJB 1EJTB 1FWEB 4GOAA 4CEUB 3QGKA 4EPDB 1EJUB 5FSDB 4AC7B 1KRBB 4CEXB 1A5MB 1A5LB 1IE7B 1FWCB 1A5OB 1EJRB 1FWFB 3LA4A 1A5NB 1FWGB 1S3TB 1FWHB 4EPEB 1FWAB 1E9ZA 1EJVB 2UBPB 4EPBB 3QGAA 3UBPB 4H9MA 4G7EB 5G4HB 1EF2B 2KAUB 4EP8B 1EJSB 1KRCB 5FSEB 1FWBB 1KRAB
chains in the Genus database with same CATH superfamily
1E9YA 4GY7A 1EJWB 1A5KB 1UBPB 5A6TB 1FWDB 4UBPB 1EJXB 1FWIB 4G7EA 4Z42B 1FWJB 1EJTB 1FWEB 4GOAA 4CEUB 3QGKA 4EPDB 1EJUB 5FSDB 4AC7B 1KRBB 4CEXB 1A5MB 1A5LB 1IE7B 1FWCB 1A5OB 1EJRB 1FWFB 3LA4A 1A5NB 1FWGB 1S3TB 1FWHB 4EPEB 1FWAB 1E9ZA 1EJVB 2UBPB 4EPBB 3QGAA 3UBPB 4H9MA 4G7EB 5G4HB 1EF2B 2KAUB 4EP8B 1EJSB 1KRCB 5FSEB 1FWBB 1KRAB
chains in the Genus database with same CATH topology
1E9YA 4GY7A 1EJWB 1A5KB 1UBPB 5A6TB 1FWDB 4UBPB 1EJXB 1FWIB 4G7EA 4Z42B 1FWJB 1EJTB 1FWEB 4GOAA 4CEUB 3QGKA 4EPDB 1EJUB 5FSDB 4AC7B 1KRBB 4CEXB 1A5MB 1A5LB 1IE7B 1FWCB 1A5OB 1EJRB 1FWFB 3LA4A 1A5NB 1FWGB 1S3TB 1FWHB 4EPEB 1FWAB 1E9ZA 1EJVB 2UBPB 4EPBB 3QGAA 3UBPB 4H9MA 4G7EB 5G4HB 1EF2B 2KAUB 4EP8B 1EJSB 1KRCB 5FSEB 1FWBB 1KRAB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1E9Y A;  4GY7 A;  1EJW B;  1A5K B;  1UBP B;  5A6T B;  1FWD B;  4UBP B;  1EJX B;  1FWI B;  4G7E A;  4Z42 B;  1FWJ B;  1EJT B;  1FWE B;  4GOA A;  4CEU B;  3QGK A;  4EPD B;  1EJU B;  5FSD B;  4AC7 B;  1KRB B;  4CEX B;  1A5M B;  1A5L B;  1IE7 B;  1FWC B;  1A5O B;  1EJR B;  1FWF B;  3LA4 A;  1A5N B;  1FWG B;  1S3T B;  1FWH B;  4EPE B;  1FWA B;  1E9Z A;  1EJV B;  2UBP B;  4EPB B;  3QGA A;  3UBP B;  4H9M A;  4G7E B;  5G4H B;  1EF2 B;  2KAU B;  4EP8 B;  1EJS B;  1KRC B;  5FSE B;  1FWB B;  1KRA B; 
#chains in the Genus database with same CATH topology
 1E9Y A;  4GY7 A;  1EJW B;  1A5K B;  1UBP B;  5A6T B;  1FWD B;  4UBP B;  1EJX B;  1FWI B;  4G7E A;  4Z42 B;  1FWJ B;  1EJT B;  1FWE B;  4GOA A;  4CEU B;  3QGK A;  4EPD B;  1EJU B;  5FSD B;  4AC7 B;  1KRB B;  4CEX B;  1A5M B;  1A5L B;  1IE7 B;  1FWC B;  1A5O B;  1EJR B;  1FWF B;  3LA4 A;  1A5N B;  1FWG B;  1S3T B;  1FWH B;  4EPE B;  1FWA B;  1E9Z A;  1EJV B;  2UBP B;  4EPB B;  3QGA A;  3UBP B;  4H9M A;  4G7E B;  5G4H B;  1EF2 B;  2KAU B;  4EP8 B;  1EJS B;  1KRC B;  5FSE B;  1FWB B;  1KRA B; 
#chains in the Genus database with same CATH homology
 1E9Y A;  4GY7 A;  1EJW B;  1A5K B;  1UBP B;  5A6T B;  1FWD B;  4UBP B;  1EJX B;  1FWI B;  4G7E A;  4Z42 B;  1FWJ B;  1EJT B;  1FWE B;  4GOA A;  4CEU B;  3QGK A;  4EPD B;  1EJU B;  5FSD B;  4AC7 B;  1KRB B;  4CEX B;  1A5M B;  1A5L B;  1IE7 B;  1FWC B;  1A5O B;  1EJR B;  1FWF B;  3LA4 A;  1A5N B;  1FWG B;  1S3T B;  1FWH B;  4EPE B;  1FWA B;  1E9Z A;  1EJV B;  2UBP B;  4EPB B;  3QGA A;  3UBP B;  4H9M A;  4G7E B;  5G4H B;  1EF2 B;  2KAU B;  4EP8 B;  1EJS B;  1KRC B;  5FSE B;  1FWB B;  1KRA B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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