4MSIA

Type iii antifreeze protein isoform hplc 12
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
66
structure length
66
Chain Sequence
MAQASVVANQLIPINTTLTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The effects of steric mutations on the structure of type III antifreeze protein and its interaction with ice.
pubmed doi rcsb
molecule tags Antifreeze
source organism Macrozoarces americanus
molecule keywords TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12
total genus 14
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1997-09-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 4msiA00
1KDFA 2SPGA 3AMEA 2MSIA 1GZIA 4IPIA 1AMEA 9AMEA 3FRNA 1XUZA 1B7KA 2WQPA 7AMEA 2JIAA 2ZDRA 1KDEA 1C8AA 2LX2A 2MSJA 1UCSA 4MSIA 6MSIA 1HG7A 2LX3A 3QF6A 3RDNA 4UR4A 1B7JA 1JABA 9MSIA 5MSIA 1MSIA 1OPSA 8MSIA 1C89A 1MSJA 4IPJA 3CM4A 4AMEA 7MSIA 6AMEA 1XUUA 1B7IA 3G8RA 3NLAA 4UR6A 4NY6A 1WVOA 3MSIA 1VLIA 1EKLA 2AMEA 8AMEA
chains in the Genus database with same CATH superfamily
1KDFA 2SPGA 3AMEA 2MSIA 1GZIA 3K3SA 4IPIA 1AMEA 9AMEA 3FRNA 1XUZA 3LAZA 1B7KA 2WQPA 7AMEA 2JIAA 2ZDRA 1KDEA 1C8AA 2LX2A 2MSJA 1UCSA 4MSIA 6MSIA 1HG7A 2LX3A 3QF6A 3RDNA 4UR4A 1B7JA 1JABA 9MSIA 5MSIA 1MSIA 1OPSA 8MSIA 1C89A 1MSJA 4IPJA 3CM4A 4AMEA 7MSIA 6AMEA 1XUUA 1B7IA 3G8RA 3NLAA 4UR6A 4NY6A 1WVOA 3MSIA 1VLIA 1EKLA 2AMEA 8AMEA
chains in the Genus database with same CATH topology
1KDFA 2SPGA 3AMEA 2MSIA 1GZIA 4IPIA 1AMEA 9AMEA 3FRNA 1XUZA 1B7KA 2WQPA 7AMEA 2JIAA 2ZDRA 1KDEA 1C8AA 2LX2A 2MSJA 1UCSA 4MSIA 6MSIA 1HG7A 2LX3A 3QF6A 3RDNA 4UR4A 1B7JA 1JABA 9MSIA 5MSIA 1MSIA 1OPSA 8MSIA 1C89A 1MSJA 4IPJA 3CM4A 4AMEA 7MSIA 6AMEA 1XUUA 1B7IA 3G8RA 3NLAA 4UR6A 4NY6A 1WVOA 3MSIA 1VLIA 1EKLA 2AMEA 8AMEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KDF A;  2SPG A;  3AME A;  2MSI A;  1GZI A;  4IPI A;  1AME A;  9AME A;  3FRN A;  1XUZ A;  1B7K A;  2WQP A;  7AME A;  2JIA A;  2ZDR A;  1KDE A;  1C8A A;  2LX2 A;  2MSJ A;  1UCS A;  4MSI A;  6MSI A;  1HG7 A;  2LX3 A;  3QF6 A;  3RDN A;  4UR4 A;  1B7J A;  1JAB A;  9MSI A;  5MSI A;  1MSI A;  1OPS A;  8MSI A;  1C89 A;  1MSJ A;  4IPJ A;  3CM4 A;  4AME A;  7MSI A;  6AME A;  1XUU A;  1B7I A;  3G8R A;  3NLA A;  4UR6 A;  4NY6 A;  1WVO A;  3MSI A;  1VLI A;  1EKL A;  2AME A;  8AME A; 
#chains in the Genus database with same CATH topology
 1KDF A;  2SPG A;  3AME A;  2MSI A;  1GZI A;  3K3S A;  4IPI A;  1AME A;  9AME A;  3FRN A;  1XUZ A;  3LAZ A;  1B7K A;  2WQP A;  7AME A;  2JIA A;  2ZDR A;  1KDE A;  1C8A A;  2LX2 A;  2MSJ A;  1UCS A;  4MSI A;  6MSI A;  1HG7 A;  2LX3 A;  3QF6 A;  3RDN A;  4UR4 A;  1B7J A;  1JAB A;  9MSI A;  5MSI A;  1MSI A;  1OPS A;  8MSI A;  1C89 A;  1MSJ A;  4IPJ A;  3CM4 A;  4AME A;  7MSI A;  6AME A;  1XUU A;  1B7I A;  3G8R A;  3NLA A;  4UR6 A;  4NY6 A;  1WVO A;  3MSI A;  1VLI A;  1EKL A;  2AME A;  8AME A; 
#chains in the Genus database with same CATH homology
 1KDF A;  2SPG A;  3AME A;  2MSI A;  1GZI A;  4IPI A;  1AME A;  9AME A;  3FRN A;  1XUZ A;  1B7K A;  2WQP A;  7AME A;  2JIA A;  2ZDR A;  1KDE A;  1C8A A;  2LX2 A;  2MSJ A;  1UCS A;  4MSI A;  6MSI A;  1HG7 A;  2LX3 A;  3QF6 A;  3RDN A;  4UR4 A;  1B7J A;  1JAB A;  9MSI A;  5MSI A;  1MSI A;  1OPS A;  8MSI A;  1C89 A;  1MSJ A;  4IPJ A;  3CM4 A;  4AME A;  7MSI A;  6AME A;  1XUU A;  1B7I A;  3G8R A;  3NLA A;  4UR6 A;  4NY6 A;  1WVO A;  3MSI A;  1VLI A;  1EKL A;  2AME A;  8AME A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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