4UR6 | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	64
structure length	64
Chain Sequence	GESVVATQLIPINTALTPAMMAGKVTNPSGIPFAEMSQIVGKQVNTPVAKGQTLMPDMVKTYVP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 64 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Zoarces viviparus
publication title	Purification, Crystal Structure Determination and Functional Characterization of Type III Antifreeze Proteins from the European Eelpout Zoarces Viviparus. pubmed doi rcsb
molecule keywords	TYPE III ANTIFREEZE PROTEIN 6
total genus	14
structure length	64
sequence length	64
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-06-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08666	SAF	SAF domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	4ur6A00

2JIAA 7AMEA 3AMEA 1C89A 4UR4A 2MSIA 3G8RA 1EKLA 1XUZA 1VLIA 2MSJA 2ZDRA 3NLAA 3CM4A 2LX3A 4IPJA 8MSIA 1MSIA 1AMEA 6MSIA 3RDNA 1B7KA 1B7JA 2AMEA 1UCSA 3MSIA 9AMEA 1JABA 2LX2A 8AMEA 1C8AA 6AMEA 1OPSA 2SPGA 1HG7A 4NY6A 1MSJA 3FRNA 4IPIA 4AMEA 7MSIA 4MSIA 9MSIA 1KDEA 1WVOA 4UR6A 1KDFA 1XUUA 5MSIA 1GZIA 3QF6A 1B7IA 2WQPA
chains in the Genus database with same CATH superfamily

2JIAA 7AMEA 3AMEA 1C89A 4UR4A 3LAZA 2MSIA 3G8RA 1EKLA 1XUZA 1VLIA 2MSJA 2ZDRA 3NLAA 3CM4A 2LX3A 4IPJA 8MSIA 1MSIA 1AMEA 6MSIA 3RDNA 1B7KA 1B7JA 2AMEA 1UCSA 3MSIA 9AMEA 1JABA 2LX2A 8AMEA 1C8AA 6AMEA 1OPSA 2SPGA 1HG7A 4NY6A 1MSJA 3FRNA 4IPIA 4AMEA 7MSIA 3K3SA 4MSIA 9MSIA 1KDEA 1WVOA 4UR6A 1KDFA 1XUUA 5MSIA 1GZIA 3QF6A 1B7IA 2WQPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2JIA A;  7AME A;  3AME A;  1C89 A;  4UR4 A;  2MSI A;  3G8R A;  1EKL A;  1XUZ A;  1VLI A;  2MSJ A;  2ZDR A;  3NLA A;  3CM4 A;  2LX3 A;  4IPJ A;  8MSI A;  1MSI A;  1AME A;  6MSI A;  3RDN A;  1B7K A;  1B7J A;  2AME A;  1UCS A;  3MSI A;  9AME A;  1JAB A;  2LX2 A;  8AME A;  1C8A A;  6AME A;  1OPS A;  2SPG A;  1HG7 A;  4NY6 A;  1MSJ A;  3FRN A;  4IPI A;  4AME A;  7MSI A;  4MSI A;  9MSI A;  1KDE A;  1WVO A;  4UR6 A;  1KDF A;  1XUU A;  5MSI A;  1GZI A;  3QF6 A;  1B7I A;  2WQP A; 
#chains in the Genus database with same CATH topology
 2JIA A;  7AME A;  3AME A;  1C89 A;  4UR4 A;  3LAZ A;  2MSI A;  3G8R A;  1EKL A;  1XUZ A;  1VLI A;  2MSJ A;  2ZDR A;  3NLA A;  3CM4 A;  2LX3 A;  4IPJ A;  8MSI A;  1MSI A;  1AME A;  6MSI A;  3RDN A;  1B7K A;  1B7J A;  2AME A;  1UCS A;  3MSI A;  9AME A;  1JAB A;  2LX2 A;  8AME A;  1C8A A;  6AME A;  1OPS A;  2SPG A;  1HG7 A;  4NY6 A;  1MSJ A;  3FRN A;  4IPI A;  4AME A;  7MSI A;  3K3S A;  4MSI A;  9MSI A;  1KDE A;  1WVO A;  4UR6 A;  1KDF A;  1XUU A;  5MSI A;  1GZI A;  3QF6 A;  1B7I A;  2WQP A; 
#chains in the Genus database with same CATH homology
 2JIA A;  7AME A;  3AME A;  1C89 A;  4UR4 A;  2MSI A;  3G8R A;  1EKL A;  1XUZ A;  1VLI A;  2MSJ A;  2ZDR A;  3NLA A;  3CM4 A;  2LX3 A;  4IPJ A;  8MSI A;  1MSI A;  1AME A;  6MSI A;  3RDN A;  1B7K A;  1B7J A;  2AME A;  1UCS A;  3MSI A;  9AME A;  1JAB A;  2LX2 A;  8AME A;  1C8A A;  6AME A;  1OPS A;  2SPG A;  1HG7 A;  4NY6 A;  1MSJ A;  3FRN A;  4IPI A;  4AME A;  7MSI A;  4MSI A;  9MSI A;  1KDE A;  1WVO A;  4UR6 A;  1KDF A;  1XUU A;  5MSI A;  1GZI A;  3QF6 A;  1B7I A;  2WQP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4UR6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations