4V23A

Rsv matrix protein
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
255
structure length
255
Chain Sequence
METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dimerization of Matrix Protein is Required for Budding of Respiratory Syncytial Virus.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords MATRIX PROTEIN
total genus 62
structure length 255
sequence length 255
ec nomenclature
pdb deposition date 2014-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03393 Pneumo_matrix Pneumovirus matrix protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.30 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 4v23A01
2YKDA 4D4TA 2VQPA 4LP7A 4V23A
chains in the Genus database with same CATH superfamily
1CY6A 2VQPA 2O5CA 1ES6A 1CY7A 1ECLA 2GAJA 2O5EA 1D6MA 4LP7A 4HI5A 3PWTA 4LDMA 1CYYA 3TCQA 4HIUA 1CY0A 4G1LA 1CY8A 4V23A 1H2CA 2GAIA 4LDDA 5D5HA 1CY1A 4CGYA 4RULA 4CHTA 1MW9X 3PX7A 1H2DA 1CY9A 3F1JA 4LDBA 2O54A 4HIYA 4G1OA 1CY2A 4HI6A 2YKDA 1I7DA 2O19A 5B0VA 4D4TA 4LD8A 1CY4A 1MW8X 4G1GA 4HIWA 4HITA 2O59A
chains in the Genus database with same CATH topology
2VQPA 1ES6A 4LP7A 4HI5A 4LDMA 3TCQA 4HIUA 4G1LA 4V23A 1H2CA 4LDDA 1H2DA 3F1JA 4LDBA 4HIYA 4HI6A 4G1OA 2YKDA 5B0VA 4D4TA 4LD8A 4G1GA 4HIWA 4HITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YKD A;  4D4T A;  2VQP A;  4LP7 A;  4V23 A; 
#chains in the Genus database with same CATH topology
 1CY6 A;  2VQP A;  2O5C A;  1ES6 A;  1CY7 A;  1ECL A;  2GAJ A;  2O5E A;  1D6M A;  4LP7 A;  4HI5 A;  3PWT A;  4LDM A;  1CYY A;  3TCQ A;  4HIU A;  1CY0 A;  4G1L A;  1CY8 A;  4V23 A;  1H2C A;  2GAI A;  4LDD A;  5D5H A;  1CY1 A;  4CGY A;  4RUL A;  4CHT A;  1MW9 X;  3PX7 A;  1H2D A;  1CY9 A;  3F1J A;  4LDB A;  2O54 A;  4HIY A;  4G1O A;  1CY2 A;  4HI6 A;  2YKD A;  1I7D A;  2O19 A;  5B0V A;  4D4T A;  4LD8 A;  1CY4 A;  1MW8 X;  4G1G A;  4HIW A;  4HIT A;  2O59 A; 
#chains in the Genus database with same CATH homology
 2VQP A;  1ES6 A;  4LP7 A;  4HI5 A;  4LDM A;  3TCQ A;  4HIU A;  4G1L A;  4V23 A;  1H2C A;  4LDD A;  1H2D A;  3F1J A;  4LDB A;  4HIY A;  4HI6 A;  4G1O A;  2YKD A;  5B0V A;  4D4T A;  4LD8 A;  4G1G A;  4HIW A;  4HIT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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