4XIGM

Crystal structure of bacterial alginate abc transporter determined through humid air and glue-coating method
Total Genus 90
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
299
structure length
288
Chain Sequence
ERLWKDIKRDWLLYAMLLPTIIWFLIFLYKPMIGLQMAFKQYIGFDHFVTLFQSEQFIRAIKNTLTLSGLSLLFGFPMPILLALMINEVYSKGYRKAVQTIVYLPHFISIVIVAGLVVTFLSPSTGVVNNMLSWIGLDRVYFLTQPEWFRPIYISSNIWKEAGFDSIVYLAAIMSINPALYESAQVDGATRWQMITRITLPCIVPTIAVLLVIRLGHILEVGFEYIILLYQPTTYETADVISTYIYRLGLQGARYDIATAAGIFNAVVALVIVLFANHMSRRITKTGV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
publication title A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
doi rcsb
molecule tags Transport protein
source organism Sphingomonas sp.
molecule keywords AlgM1
total genus 90
structure length 288
sequence length 299
ec nomenclature
pdb deposition date 2015-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3720.10 Mainly Alpha Orthogonal Bundle MetI-like fold MetI-like 4xigM01
3PUWF 3PV0F 4XTCN 3D31C 3RLFF 4YMTB 3PUWG 3PV0G 3RLFG 4XIGM 4JBWF 4KHZF 3PUYF 3PUXF 4KI0F 3PUVF 4KHZG 3PUXG 3PUZF 3PUYG 4JBWG 4KI0G 3PUVG 4XIGN 4YMSC 3PUZG 2ONKC 4TQUM 4YMUC 3TUIA 2R6GF 4XTCM 2R6GG 3TUJA 4YMWC 4YMVC 4TQUN 3DHWA 3TUZA
chains in the Genus database with same CATH superfamily
3PUWF 3PV0F 4XTCN 3D31C 3RLFF 4YMTB 3PUWG 3PV0G 3RLFG 4XIGM 4JBWF 4KHZF 3PUYF 3PUXF 4KI0F 3PUVF 4KHZG 3PUXG 3PUZF 3PUYG 4JBWG 4KI0G 3PUVG 4XIGN 4YMSC 3PUZG 2ONKC 4TQUM 4YMUC 3TUIA 2R6GF 4XTCM 2R6GG 3TUJA 4YMWC 4YMVC 4TQUN 3DHWA 3TUZA
chains in the Genus database with same CATH topology
3PUWF 3PV0F 4XTCN 3D31C 3RLFF 4YMTB 3PUWG 3PV0G 3RLFG 4XIGM 4JBWF 4KHZF 3PUYF 3PUXF 4KI0F 3PUVF 4KHZG 3PUXG 3PUZF 3PUYG 4JBWG 4KI0G 3PUVG 4XIGN 4YMSC 3PUZG 2ONKC 4TQUM 4YMUC 3TUIA 2R6GF 4XTCM 2R6GG 3TUJA 4YMWC 4YMVC 4TQUN 3DHWA 3TUZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PUW F;  3PV0 F;  4XTC N;  3D31 C;  3RLF F;  4YMT B;  3PUW G;  3PV0 G;  3RLF G;  4XIG M;  4JBW F;  4KHZ F;  3PUY F;  3PUX F;  4KI0 F;  3PUV F;  4KHZ G;  3PUX G;  3PUZ F;  3PUY G;  4JBW G;  4KI0 G;  3PUV G;  4XIG N;  4YMS C;  3PUZ G;  2ONK C;  4TQU M;  4YMU C;  3TUI A;  2R6G F;  4XTC M;  2R6G G;  3TUJ A;  4YMW C;  4YMV C;  4TQU N;  3DHW A;  3TUZ A; 
#chains in the Genus database with same CATH topology
 3PUW F;  3PV0 F;  4XTC N;  3D31 C;  3RLF F;  4YMT B;  3PUW G;  3PV0 G;  3RLF G;  4XIG M;  4JBW F;  4KHZ F;  3PUY F;  3PUX F;  4KI0 F;  3PUV F;  4KHZ G;  3PUX G;  3PUZ F;  3PUY G;  4JBW G;  4KI0 G;  3PUV G;  4XIG N;  4YMS C;  3PUZ G;  2ONK C;  4TQU M;  4YMU C;  3TUI A;  2R6G F;  4XTC M;  2R6G G;  3TUJ A;  4YMW C;  4YMV C;  4TQU N;  3DHW A;  3TUZ A; 
#chains in the Genus database with same CATH homology
 3PUW F;  3PV0 F;  4XTC N;  3D31 C;  3RLF F;  4YMT B;  3PUW G;  3PV0 G;  3RLF G;  4XIG M;  4JBW F;  4KHZ F;  3PUY F;  3PUX F;  4KI0 F;  3PUV F;  4KHZ G;  3PUX G;  3PUZ F;  3PUY G;  4JBW G;  4KI0 G;  3PUV G;  4XIG N;  4YMS C;  3PUZ G;  2ONK C;  4TQU M;  4YMU C;  3TUI A;  2R6G F;  4XTC M;  2R6G G;  3TUJ A;  4YMW C;  4YMV C;  4TQU N;  3DHW A;  3TUZ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.