4ZYB | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	133
structure length	133
Chain Sequence	AHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Staphylococcus aureus subsp. aureus nctc 8325
publication title	High resolution structure of an M23 peptidase with a substrate analogue. pubmed doi rcsb
molecule keywords	Glycyl-glycine endopeptidase LytM
total genus	37
structure length	133
sequence length	133
chains with identical sequence	B, C, D
ec nomenclature	ec 3.4.24.75: Lysostaphin.
pdb deposition date	2015-05-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01551	Peptidase_M23	Peptidase family M23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	4zybA00

1GLCF 4ZYBA 1GLEF 1F3ZA 1O2FA 1QWYA 1GLBF 3IT7A 4JBWM 4BH5A 2F3GA 4QPBA 2HSIA 1GGRA 4QP5A 5B0HA 3OURB 2B44A 3NYYA 5KVPA 1GLAF 1AX3A 2GU1A 1GPRA 2GPRA 2MP0B 1F3GA 3UZ0B 3SLUA 2B0PA 1GLDF 3IT5A 4RNYA 3CSQA 2B13A 4LXCA 4RNZA 3TUFB
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1GLC F;  4ZYB A;  1GLE F;  1F3Z A;  1O2F A;  1QWY A;  1GLB F;  3IT7 A;  4JBW M;  4BH5 A;  2F3G A;  4QPB A;  2HSI A;  1GGR A;  4QP5 A;  5B0H A;  3OUR B;  2B44 A;  3NYY A;  5KVP A;  1GLA F;  1AX3 A;  2GU1 A;  1GPR A;  2GPR A;  2MP0 B;  1F3G A;  3UZ0 B;  3SLU A;  2B0P A;  1GLD F;  3IT5 A;  4RNY A;  3CSQ A;  2B13 A;  4LXC A;  4RNZ A;  3TUF B; 
#chains in the Genus database with same CATH topology
 1GLC F;  4ZYB A;  1GLE F;  1F3Z A;  1O2F A;  1QWY A;  1GLB F;  3IT7 A;  4JBW M;  4BH5 A;  2F3G A;  4QPB A;  2HSI A;  1GGR A;  4QP5 A;  5B0H A;  3OUR B;  2B44 A;  3NYY A;  5KVP A;  1GLA F;  1AX3 A;  2GU1 A;  1GPR A;  2GPR A;  2MP0 B;  1F3G A;  3UZ0 B;  3SLU A;  2B0P A;  1GLD F;  3IT5 A;  4RNY A;  3CSQ A;  2B13 A;  4LXC A;  4RNZ A;  3TUF B; 
#chains in the Genus database with same CATH homology
 1GLC F;  4ZYB A;  1GLE F;  1F3Z A;  1O2F A;  1QWY A;  1GLB F;  3IT7 A;  4JBW M;  4BH5 A;  2F3G A;  4QPB A;  2HSI A;  1GGR A;  4QP5 A;  5B0H A;  3OUR B;  2B44 A;  3NYY A;  5KVP A;  1GLA F;  1AX3 A;  2GU1 A;  1GPR A;  2GPR A;  2MP0 B;  1F3G A;  3UZ0 B;  3SLU A;  2B0P A;  1GLD F;  3IT5 A;  4RNY A;  3CSQ A;  2B13 A;  4LXC A;  4RNZ A;  3TUF B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ZYBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations