5B0H | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	133
structure length	133
Chain Sequence	GPWANICAGKSSNEIRTCDRHGCGQYSAQRSQRPHQGVDVLCSAGSTVYAPFTGMIVGQEKPYQNKNAINNGVRISGRGFCVKMFYIKPIKYKGPIKKGEKLGTLLPLQKVYPGIQSHVHIENCDSSDPTAYL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 133 atoms

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133 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Metal binding protein
source organism	Homo sapiens
publication title	Crystal Structure of Human Leukocyte Cell-derived Chemotaxin 2 (LECT2) Reveals a Mechanistic Basis of Functional Evolution in a Mammalian Protein with an M23 Metalloendopeptidase Fold pubmed doi rcsb
molecule keywords	Leukocyte cell-derived chemotaxin-2
total genus	33
structure length	133
sequence length	133
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-10-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01551	Peptidase_M23	Peptidase family M23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.70.10	Mainly Beta	Distorted Sandwich	Glucose Permease (Domain IIA)	Glucose Permease (Domain IIA)	5b0hA00

3CSQA 4RNYA 3IT7A 1F3ZA 3TUFB 2HSIA 2B0PA 4LXCA 1GPRA 3NYYA 1F3GA 1GLEF 1AX3A 2GU1A 2F3GA 3OURB 5B0HA 5KVPA 1O2FA 1GGRA 4RNZA 4QPBA 4ZYBA 2GPRA 3UZ0B 1GLDF 4JBWM 2B13A 1GLCF 1QWYA 3SLUA 3IT5A 1GLBF 4QP5A 2B44A 1GLAF 4BH5A 2MP0B
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B; 
#chains in the Genus database with same CATH topology
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B; 
#chains in the Genus database with same CATH homology
 3CSQ A;  4RNY A;  3IT7 A;  1F3Z A;  3TUF B;  2HSI A;  2B0P A;  4LXC A;  1GPR A;  3NYY A;  1F3G A;  1GLE F;  1AX3 A;  2GU1 A;  2F3G A;  3OUR B;  5B0H A;  5KVP A;  1O2F A;  1GGR A;  4RNZ A;  4QPB A;  4ZYB A;  2GPR A;  3UZ0 B;  1GLD F;  4JBW M;  2B13 A;  1GLC F;  1QWY A;  3SLU A;  3IT5 A;  1GLB F;  4QP5 A;  2B44 A;  1GLA F;  4BH5 A;  2MP0 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5B0HA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations