5KVPA

Solution structure of the catalytic domain of zoocin a
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
159
structure length
159
Chain Sequence
MRGSHHHHHHGSATYTRPLDTGNITTGFNGYPGHVGVDYAVPVGTPVRAVANGTVKFAGNGANHPWMLWMAGNAVLIQHADGMHTGYAHLSKISVSTDSTVKQGQIIGYTGATGQVTGPHLHFEMLPANPNWQNGFSGRIDPTGYIANAPVFNGTTPTE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV4 (28-31)EMPTYS7 (105-110)TII2 (42-45)S2 (45-49)TII4 (102-105)S5 (84-93)TIV5 (49-52)S3 (53-59)TII3 (96-99)TI1 (60-63)S4 (73-78)TIV10 (112-115)TI3 (79-82)S6 (99-101)S8 (120-126)TI'1 (136-139)TIV11 (134-137)AH1 (142-147)TIV12 (151-154)S1 (37-40)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Streptococcus equi subsp. zooepidemicus
publication title Solution structure of the Cys74 to Ala74 mutant of the recombinant catalytic domain of Zoocin A.
pubmed doi rcsb
molecule keywords Zoocin A endopeptidase
total genus 16
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2016-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01551 Peptidase_M23 Peptidase family M23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 5kvpA00
4ZYBA 2B13A 1F3ZA 2B44A 2HSIA 1GLDF 4LXCA 4RNYA 1GLEF 3OURB 3TUFB 1GPRA 3NYYA 3SLUA 3UZ0B 2F3GA 1GGRA 2B0PA 4QP5A 1QWYA 1GLBF 3IT7A 2MP0B 4JBWM 4QPBA 4RNZA 5B0HA 5KVPA 2GPRA 3IT5A 1GLAF 1F3GA 1O2FA 1AX3A 4BH5A 1GLCF 2GU1A 3CSQA
chains in the Genus database with same CATH superfamily
4ZYBA 2B13A 1F3ZA 2B44A 2HSIA 1GLDF 4LXCA 4RNYA 1GLEF 3OURB 3TUFB 1GPRA 3NYYA 3SLUA 3UZ0B 2F3GA 1GGRA 2B0PA 4QP5A 1QWYA 1GLBF 3IT7A 2MP0B 4JBWM 4QPBA 4RNZA 5B0HA 5KVPA 2GPRA 3IT5A 1GLAF 1F3GA 1O2FA 1AX3A 4BH5A 1GLCF 2GU1A 3CSQA
chains in the Genus database with same CATH topology
4ZYBA 2B13A 1F3ZA 2B44A 2HSIA 1GLDF 4LXCA 4RNYA 1GLEF 3OURB 3TUFB 1GPRA 3NYYA 3SLUA 3UZ0B 2F3GA 1GGRA 2B0PA 4QP5A 1QWYA 1GLBF 3IT7A 2MP0B 4JBWM 4QPBA 4RNZA 5B0HA 5KVPA 2GPRA 3IT5A 1GLAF 1F3GA 1O2FA 1AX3A 4BH5A 1GLCF 2GU1A 3CSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A; 
#chains in the Genus database with same CATH topology
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A; 
#chains in the Genus database with same CATH homology
 4ZYB A;  2B13 A;  1F3Z A;  2B44 A;  2HSI A;  1GLD F;  4LXC A;  4RNY A;  1GLE F;  3OUR B;  3TUF B;  1GPR A;  3NYY A;  3SLU A;  3UZ0 B;  2F3G A;  1GGR A;  2B0P A;  4QP5 A;  1QWY A;  1GLB F;  3IT7 A;  2MP0 B;  4JBW M;  4QPB A;  4RNZ A;  5B0H A;  5KVP A;  2GPR A;  3IT5 A;  1GLA F;  1F3G A;  1O2F A;  1AX3 A;  4BH5 A;  1GLC F;  2GU1 A;  3CSQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.