7AME | Genus

Total Genus 13

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	66
structure length	66
Chain Sequence	ANQASVVANQLIPINAALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifreeze protein
source organism	Macrozoarces americanus
publication title	Quantitative and qualitative analysis of type III antifreeze protein structure and function. pubmed doi rcsb
molecule keywords	PROTEIN (ANTIFREEZE PROTEIN TYPE III)
total genus	13
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	1999-01-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1210.10	Alpha Beta	Alpha-Beta Complex	Type Iii Antifreeze Protein Isoform Hplc 12	Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain	7ameA00

1B7KA 4UR4A 1VLIA 8AMEA 3FRNA 2LX3A 9AMEA 4MSIA 1XUUA 2MSJA 1XUZA 1JABA 4UR6A 1KDEA 7MSIA 3AMEA 2MSIA 1C89A 4AMEA 3G8RA 1C8AA 1AMEA 1MSIA 1KDFA 3QF6A 2AMEA 3NLAA 2LX2A 2WQPA 1B7JA 1HG7A 7AMEA 3RDNA 1UCSA 2SPGA 6AMEA 1MSJA 4IPIA 3MSIA 4NY6A 1EKLA 1WVOA 1B7IA 5MSIA 4IPJA 2ZDRA 9MSIA 8MSIA 6MSIA 1GZIA 3CM4A 2JIAA 1OPSA
chains in the Genus database with same CATH superfamily

3LAZA 1B7KA 4UR4A 1VLIA 3K3SA 8AMEA 3FRNA 2LX3A 9AMEA 4MSIA 1XUUA 2MSJA 1XUZA 1JABA 4UR6A 1KDEA 7MSIA 3AMEA 2MSIA 1C89A 4AMEA 3G8RA 1C8AA 1AMEA 1MSIA 1KDFA 3QF6A 2AMEA 3NLAA 2LX2A 2WQPA 1B7JA 1HG7A 7AMEA 3RDNA 1UCSA 2SPGA 6AMEA 1MSJA 4IPIA 3MSIA 4NY6A 1EKLA 1WVOA 1B7IA 5MSIA 4IPJA 2ZDRA 9MSIA 8MSIA 6MSIA 1GZIA 3CM4A 2JIAA 1OPSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1B7K A;  4UR4 A;  1VLI A;  8AME A;  3FRN A;  2LX3 A;  9AME A;  4MSI A;  1XUU A;  2MSJ A;  1XUZ A;  1JAB A;  4UR6 A;  1KDE A;  7MSI A;  3AME A;  2MSI A;  1C89 A;  4AME A;  3G8R A;  1C8A A;  1AME A;  1MSI A;  1KDF A;  3QF6 A;  2AME A;  3NLA A;  2LX2 A;  2WQP A;  1B7J A;  1HG7 A;  7AME A;  3RDN A;  1UCS A;  2SPG A;  6AME A;  1MSJ A;  4IPI A;  3MSI A;  4NY6 A;  1EKL A;  1WVO A;  1B7I A;  5MSI A;  4IPJ A;  2ZDR A;  9MSI A;  8MSI A;  6MSI A;  1GZI A;  3CM4 A;  2JIA A;  1OPS A; 
#chains in the Genus database with same CATH topology
 3LAZ A;  1B7K A;  4UR4 A;  1VLI A;  3K3S A;  8AME A;  3FRN A;  2LX3 A;  9AME A;  4MSI A;  1XUU A;  2MSJ A;  1XUZ A;  1JAB A;  4UR6 A;  1KDE A;  7MSI A;  3AME A;  2MSI A;  1C89 A;  4AME A;  3G8R A;  1C8A A;  1AME A;  1MSI A;  1KDF A;  3QF6 A;  2AME A;  3NLA A;  2LX2 A;  2WQP A;  1B7J A;  1HG7 A;  7AME A;  3RDN A;  1UCS A;  2SPG A;  6AME A;  1MSJ A;  4IPI A;  3MSI A;  4NY6 A;  1EKL A;  1WVO A;  1B7I A;  5MSI A;  4IPJ A;  2ZDR A;  9MSI A;  8MSI A;  6MSI A;  1GZI A;  3CM4 A;  2JIA A;  1OPS A; 
#chains in the Genus database with same CATH homology
 1B7K A;  4UR4 A;  1VLI A;  8AME A;  3FRN A;  2LX3 A;  9AME A;  4MSI A;  1XUU A;  2MSJ A;  1XUZ A;  1JAB A;  4UR6 A;  1KDE A;  7MSI A;  3AME A;  2MSI A;  1C89 A;  4AME A;  3G8R A;  1C8A A;  1AME A;  1MSI A;  1KDF A;  3QF6 A;  2AME A;  3NLA A;  2LX2 A;  2WQP A;  1B7J A;  1HG7 A;  7AME A;  3RDN A;  1UCS A;  2SPG A;  6AME A;  1MSJ A;  4IPI A;  3MSI A;  4NY6 A;  1EKL A;  1WVO A;  1B7I A;  5MSI A;  4IPJ A;  2ZDR A;  9MSI A;  8MSI A;  6MSI A;  1GZI A;  3CM4 A;  2JIA A;  1OPS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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7AMEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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