1HR0N

Crystal structure of initiation factor if1 bound to the 30s ribosomal subunit
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
source organism Escherichia coli
molecule keywords 16S RIBOSOMAL RNA
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2000-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 1hr0N00
4YHHN 5A2Qd 1I94N 4DR7N 1HNXN 4K0KN 4DV6N 4JI8N 2UU9N 5FLXd 4DR6N 4NXNN 4LF9N 4DR5N 4LF7N 4JI4N 4B3MN 4JI6N 4DV4N 1XNRN 4GKKN 4JV5N 2UUBN 4LF5N 4JI3N 4DR3N 5IT9d 3OTON 3J80d 1N36N 1HR0N 4KHPN 1XMQN 4DR4N 4JYAN 4B3SN 4YY3N 4LF8N 1HNWN 4B3TN 4DV2N 4DR1N 2UXBN 2UUCN 3JAMd 1N34N 3J81d 4JI5N 2E5LN 4JI1N 4NXMN 2UXCN 4X62N 2HHHN 1IBKN 2UUAN 2ZM6N 4DUZN 1IBLN 4JI0N 4DV5N 5IWAN 2VQEN 3J7AT 1J5EN 4DV1N 3T1HN 4GKJN 2F4VN 4DV7N 3T1YN 4DUYN 5BR8N 4LF4N 4DR2N 4B3RN 4LFAN 4JI2N 4AQYN 5LMUN 4X65N 4DV0N 4DV3N 1XNQN 2VQFN 2UXDN 1N33N 4LF6N 4X64N 4JI7N 4X66N 1IBMN 1N32N 1XMON 4LFBN 5LMNN 4OX9N 1HNZN 1FJGN 4LFCN
chains in the Genus database with same CATH superfamily
4YHHN 5A2Qd 1I94N 4DR7N 1HNXN 4K0KN 4DV6N 4JI8N 2UU9N 5FLXd 4DR6N 4NXNN 4LF9N 4DR5N 4LF7N 4JI4N 4B3MN 4JI6N 4DV4N 1XNRN 4GKKN 4JV5N 2UUBN 4LF5N 4JI3N 4DR3N 5IT9d 3OTON 3J80d 1N36N 1HR0N 4KHPN 1XMQN 4DR4N 4JYAN 4B3SN 4YY3N 4LF8N 1HNWN 4B3TN 4DV2N 4DR1N 2UXBN 2UUCN 3JAMd 1N34N 3J81d 4JI5N 2E5LN 4JI1N 4NXMN 2UXCN 4X62N 2HHHN 1IBKN 2UUAN 2ZM6N 4DUZN 1IBLN 4JI0N 4DV5N 5IWAN 2VQEN 3J7AT 1J5EN 4DV1N 3T1HN 4GKJN 2F4VN 4DV7N 3T1YN 4DUYN 5BR8N 4LF4N 4DR2N 4B3RN 4LFAN 4JI2N 4AQYN 5LMUN 4X65N 4DV0N 4DV3N 1XNQN 2VQFN 2UXDN 1N33N 4LF6N 4X64N 4JI7N 4X66N 1IBMN 1N32N 1XMON 4LFBN 5LMNN 4OX9N 1HNZN 1FJGN 4LFCN
chains in the Genus database with same CATH topology
4YHHN 5A2Qd 1I94N 4DR7N 1HNXN 4K0KN 4DV6N 4JI8N 2UU9N 5FLXd 4DR6N 4NXNN 4LF9N 4DR5N 4LF7N 4JI4N 4B3MN 4JI6N 4DV4N 1XNRN 4GKKN 4JV5N 2UUBN 4LF5N 4JI3N 4DR3N 5IT9d 3OTON 3J80d 1N36N 1HR0N 4KHPN 1XMQN 4DR4N 4JYAN 4B3SN 4YY3N 4LF8N 1HNWN 4B3TN 4DV2N 4DR1N 2UXBN 2UUCN 3JAMd 1N34N 3J81d 4JI5N 2E5LN 4JI1N 4NXMN 2UXCN 4X62N 2HHHN 1IBKN 2UUAN 2ZM6N 4DUZN 1IBLN 4JI0N 4DV5N 5IWAN 2VQEN 3J7AT 1J5EN 4DV1N 3T1HN 4GKJN 2F4VN 4DV7N 3T1YN 4DUYN 5BR8N 4LF4N 4DR2N 4B3RN 4LFAN 4JI2N 4AQYN 5LMUN 4X65N 4DV0N 4DV3N 1XNQN 2VQFN 2UXDN 1N33N 4LF6N 4X64N 4JI7N 4X66N 1IBMN 1N32N 1XMON 4LFBN 5LMNN 4OX9N 1HNZN 1FJGN 4LFCN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YHH N;  5A2Q d;  1I94 N;  4DR7 N;  1HNX N;  4K0K N;  4DV6 N;  4JI8 N;  2UU9 N;  5FLX d;  4DR6 N;  4NXN N;  4LF9 N;  4DR5 N;  4LF7 N;  4JI4 N;  4B3M N;  4JI6 N;  4DV4 N;  1XNR N;  4GKK N;  4JV5 N;  2UUB N;  4LF5 N;  4JI3 N;  4DR3 N;  5IT9 d;  3OTO N;  3J80 d;  1N36 N;  1HR0 N;  4KHP N;  1XMQ N;  4DR4 N;  4JYA N;  4B3S N;  4YY3 N;  4LF8 N;  1HNW N;  4B3T N;  4DV2 N;  4DR1 N;  2UXB N;  2UUC N;  3JAM d;  1N34 N;  3J81 d;  4JI5 N;  2E5L N;  4JI1 N;  4NXM N;  2UXC N;  4X62 N;  2HHH N;  1IBK N;  2UUA N;  2ZM6 N;  4DUZ N;  1IBL N;  4JI0 N;  4DV5 N;  5IWA N;  2VQE N;  3J7A T;  1J5E N;  4DV1 N;  3T1H N;  4GKJ N;  2F4V N;  4DV7 N;  3T1Y N;  4DUY N;  5BR8 N;  4LF4 N;  4DR2 N;  4B3R N;  4LFA N;  4JI2 N;  4AQY N;  5LMU N;  4X65 N;  4DV0 N;  4DV3 N;  1XNQ N;  2VQF N;  2UXD N;  1N33 N;  4LF6 N;  4X64 N;  4JI7 N;  4X66 N;  1IBM N;  1N32 N;  1XMO N;  4LFB N;  5LMN N;  4OX9 N;  1HNZ N;  1FJG N;  4LFC N; 
#chains in the Genus database with same CATH topology
 4YHH N;  5A2Q d;  1I94 N;  4DR7 N;  1HNX N;  4K0K N;  4DV6 N;  4JI8 N;  2UU9 N;  5FLX d;  4DR6 N;  4NXN N;  4LF9 N;  4DR5 N;  4LF7 N;  4JI4 N;  4B3M N;  4JI6 N;  4DV4 N;  1XNR N;  4GKK N;  4JV5 N;  2UUB N;  4LF5 N;  4JI3 N;  4DR3 N;  5IT9 d;  3OTO N;  3J80 d;  1N36 N;  1HR0 N;  4KHP N;  1XMQ N;  4DR4 N;  4JYA N;  4B3S N;  4YY3 N;  4LF8 N;  1HNW N;  4B3T N;  4DV2 N;  4DR1 N;  2UXB N;  2UUC N;  3JAM d;  1N34 N;  3J81 d;  4JI5 N;  2E5L N;  4JI1 N;  4NXM N;  2UXC N;  4X62 N;  2HHH N;  1IBK N;  2UUA N;  2ZM6 N;  4DUZ N;  1IBL N;  4JI0 N;  4DV5 N;  5IWA N;  2VQE N;  3J7A T;  1J5E N;  4DV1 N;  3T1H N;  4GKJ N;  2F4V N;  4DV7 N;  3T1Y N;  4DUY N;  5BR8 N;  4LF4 N;  4DR2 N;  4B3R N;  4LFA N;  4JI2 N;  4AQY N;  5LMU N;  4X65 N;  4DV0 N;  4DV3 N;  1XNQ N;  2VQF N;  2UXD N;  1N33 N;  4LF6 N;  4X64 N;  4JI7 N;  4X66 N;  1IBM N;  1N32 N;  1XMO N;  4LFB N;  5LMN N;  4OX9 N;  1HNZ N;  1FJG N;  4LFC N; 
#chains in the Genus database with same CATH homology
 4YHH N;  5A2Q d;  1I94 N;  4DR7 N;  1HNX N;  4K0K N;  4DV6 N;  4JI8 N;  2UU9 N;  5FLX d;  4DR6 N;  4NXN N;  4LF9 N;  4DR5 N;  4LF7 N;  4JI4 N;  4B3M N;  4JI6 N;  4DV4 N;  1XNR N;  4GKK N;  4JV5 N;  2UUB N;  4LF5 N;  4JI3 N;  4DR3 N;  5IT9 d;  3OTO N;  3J80 d;  1N36 N;  1HR0 N;  4KHP N;  1XMQ N;  4DR4 N;  4JYA N;  4B3S N;  4YY3 N;  4LF8 N;  1HNW N;  4B3T N;  4DV2 N;  4DR1 N;  2UXB N;  2UUC N;  3JAM d;  1N34 N;  3J81 d;  4JI5 N;  2E5L N;  4JI1 N;  4NXM N;  2UXC N;  4X62 N;  2HHH N;  1IBK N;  2UUA N;  2ZM6 N;  4DUZ N;  1IBL N;  4JI0 N;  4DV5 N;  5IWA N;  2VQE N;  3J7A T;  1J5E N;  4DV1 N;  3T1H N;  4GKJ N;  2F4V N;  4DV7 N;  3T1Y N;  4DUY N;  5BR8 N;  4LF4 N;  4DR2 N;  4B3R N;  4LFA N;  4JI2 N;  4AQY N;  5LMU N;  4X65 N;  4DV0 N;  4DV3 N;  1XNQ N;  2VQF N;  2UXD N;  1N33 N;  4LF6 N;  4X64 N;  4JI7 N;  4X66 N;  1IBM N;  1N32 N;  1XMO N;  4LFB N;  5LMN N;  4OX9 N;  1HNZ N;  1FJG N;  4LFC N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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