3J81d

Cryoem structure of a partial yeast 48s preinitiation complex
Total Genus 7
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
ENVWYSHPRKFGKGSRQCRISGSHSGLIRKYGLNIDRQSFREKANDIGFYKYR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
pubmed doi rcsb
molecule tags Ribosome
source organism Saccharomyces cerevisiae
molecule keywords 18S rRNA
total genus 7
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 3j81d00
4X66N 4YHHN 3JAMd 4JI4N 4DV6N 4LF8N 4DR3N 2VQFN 4DV2N 4LFAN 4DR6N 4DV5N 3T1HN 1XMQN 4DR2N 4JI6N 1HR0N 2F4VN 2UXCN 2UU9N 1HNXN 1N34N 5IWAN 4LF5N 1FJGN 4DV3N 4DR1N 4LFBN 4LF9N 4DV7N 1XNRN 1N33N 4DUYN 2UUAN 4B3RN 4JYAN 1XNQN 4DR7N 4JI8N 5FLXd 4DV0N 1HNZN 2UUBN 4JI0N 1IBMN 4GKJN 4JI5N 4DR5N 4X62N 1IBKN 4DV1N 1IBLN 3T1YN 5LMUN 4GKKN 5A2Qd 4YY3N 2ZM6N 4B3SN 4LF7N 2UUCN 1XMON 4X65N 4OX9N 4B3MN 4JI1N 4LFCN 5IT9d 5BR8N 4X64N 1I94N 1N36N 4NXMN 1N32N 4NXNN 4JI2N 4JV5N 2UXDN 4JI7N 1HNWN 4AQYN 1J5EN 4LF6N 4DV4N 3J81d 4B3TN 3J80d 3J7AT 4LF4N 5LMNN 4K0KN 2E5LN 2VQEN 3OTON 2HHHN 4DUZN 4KHPN 4JI3N 2UXBN 4DR4N
chains in the Genus database with same CATH superfamily
4X66N 4YHHN 3JAMd 4JI4N 4DV6N 4LF8N 4DR3N 2VQFN 4DV2N 4LFAN 4DR6N 4DV5N 3T1HN 1XMQN 4DR2N 4JI6N 1HR0N 2F4VN 2UXCN 2UU9N 1HNXN 1N34N 5IWAN 4LF5N 1FJGN 4DV3N 4DR1N 4LFBN 4LF9N 4DV7N 1XNRN 1N33N 4DUYN 2UUAN 4B3RN 4JYAN 1XNQN 4DR7N 4JI8N 5FLXd 4DV0N 1HNZN 2UUBN 4JI0N 1IBMN 4GKJN 4JI5N 4DR5N 4X62N 1IBKN 4DV1N 1IBLN 3T1YN 5LMUN 4GKKN 5A2Qd 4YY3N 2ZM6N 4B3SN 4LF7N 2UUCN 1XMON 4X65N 4OX9N 4B3MN 4JI1N 4LFCN 5IT9d 5BR8N 4X64N 1I94N 1N36N 4NXMN 1N32N 4NXNN 4JI2N 4JV5N 2UXDN 4JI7N 1HNWN 4AQYN 1J5EN 4LF6N 4DV4N 3J81d 4B3TN 3J80d 3J7AT 4LF4N 5LMNN 4K0KN 2E5LN 2VQEN 3OTON 2HHHN 4DUZN 4KHPN 4JI3N 2UXBN 4DR4N
chains in the Genus database with same CATH topology
4X66N 4YHHN 3JAMd 4JI4N 4DV6N 4LF8N 4DR3N 2VQFN 4DV2N 4LFAN 4DR6N 4DV5N 3T1HN 1XMQN 4DR2N 4JI6N 1HR0N 2F4VN 2UXCN 2UU9N 1HNXN 1N34N 5IWAN 4LF5N 1FJGN 4DV3N 4DR1N 4LFBN 4LF9N 4DV7N 1XNRN 1N33N 4DUYN 2UUAN 4B3RN 4JYAN 1XNQN 4DR7N 4JI8N 5FLXd 4DV0N 1HNZN 2UUBN 4JI0N 1IBMN 4GKJN 4JI5N 4DR5N 4X62N 1IBKN 4DV1N 1IBLN 3T1YN 5LMUN 4GKKN 5A2Qd 4YY3N 2ZM6N 4B3SN 4LF7N 2UUCN 1XMON 4X65N 4OX9N 4B3MN 4JI1N 4LFCN 5IT9d 5BR8N 4X64N 1I94N 1N36N 4NXMN 1N32N 4NXNN 4JI2N 4JV5N 2UXDN 4JI7N 1HNWN 4AQYN 1J5EN 4LF6N 4DV4N 3J81d 4B3TN 3J80d 3J7AT 4LF4N 5LMNN 4K0KN 2E5LN 2VQEN 3OTON 2HHHN 4DUZN 4KHPN 4JI3N 2UXBN 4DR4N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X66 N;  4YHH N;  3JAM d;  4JI4 N;  4DV6 N;  4LF8 N;  4DR3 N;  2VQF N;  4DV2 N;  4LFA N;  4DR6 N;  4DV5 N;  3T1H N;  1XMQ N;  4DR2 N;  4JI6 N;  1HR0 N;  2F4V N;  2UXC N;  2UU9 N;  1HNX N;  1N34 N;  5IWA N;  4LF5 N;  1FJG N;  4DV3 N;  4DR1 N;  4LFB N;  4LF9 N;  4DV7 N;  1XNR N;  1N33 N;  4DUY N;  2UUA N;  4B3R N;  4JYA N;  1XNQ N;  4DR7 N;  4JI8 N;  5FLX d;  4DV0 N;  1HNZ N;  2UUB N;  4JI0 N;  1IBM N;  4GKJ N;  4JI5 N;  4DR5 N;  4X62 N;  1IBK N;  4DV1 N;  1IBL N;  3T1Y N;  5LMU N;  4GKK N;  5A2Q d;  4YY3 N;  2ZM6 N;  4B3S N;  4LF7 N;  2UUC N;  1XMO N;  4X65 N;  4OX9 N;  4B3M N;  4JI1 N;  4LFC N;  5IT9 d;  5BR8 N;  4X64 N;  1I94 N;  1N36 N;  4NXM N;  1N32 N;  4NXN N;  4JI2 N;  4JV5 N;  2UXD N;  4JI7 N;  1HNW N;  4AQY N;  1J5E N;  4LF6 N;  4DV4 N;  3J81 d;  4B3T N;  3J80 d;  3J7A T;  4LF4 N;  5LMN N;  4K0K N;  2E5L N;  2VQE N;  3OTO N;  2HHH N;  4DUZ N;  4KHP N;  4JI3 N;  2UXB N;  4DR4 N; 
#chains in the Genus database with same CATH topology
 4X66 N;  4YHH N;  3JAM d;  4JI4 N;  4DV6 N;  4LF8 N;  4DR3 N;  2VQF N;  4DV2 N;  4LFA N;  4DR6 N;  4DV5 N;  3T1H N;  1XMQ N;  4DR2 N;  4JI6 N;  1HR0 N;  2F4V N;  2UXC N;  2UU9 N;  1HNX N;  1N34 N;  5IWA N;  4LF5 N;  1FJG N;  4DV3 N;  4DR1 N;  4LFB N;  4LF9 N;  4DV7 N;  1XNR N;  1N33 N;  4DUY N;  2UUA N;  4B3R N;  4JYA N;  1XNQ N;  4DR7 N;  4JI8 N;  5FLX d;  4DV0 N;  1HNZ N;  2UUB N;  4JI0 N;  1IBM N;  4GKJ N;  4JI5 N;  4DR5 N;  4X62 N;  1IBK N;  4DV1 N;  1IBL N;  3T1Y N;  5LMU N;  4GKK N;  5A2Q d;  4YY3 N;  2ZM6 N;  4B3S N;  4LF7 N;  2UUC N;  1XMO N;  4X65 N;  4OX9 N;  4B3M N;  4JI1 N;  4LFC N;  5IT9 d;  5BR8 N;  4X64 N;  1I94 N;  1N36 N;  4NXM N;  1N32 N;  4NXN N;  4JI2 N;  4JV5 N;  2UXD N;  4JI7 N;  1HNW N;  4AQY N;  1J5E N;  4LF6 N;  4DV4 N;  3J81 d;  4B3T N;  3J80 d;  3J7A T;  4LF4 N;  5LMN N;  4K0K N;  2E5L N;  2VQE N;  3OTO N;  2HHH N;  4DUZ N;  4KHP N;  4JI3 N;  2UXB N;  4DR4 N; 
#chains in the Genus database with same CATH homology
 4X66 N;  4YHH N;  3JAM d;  4JI4 N;  4DV6 N;  4LF8 N;  4DR3 N;  2VQF N;  4DV2 N;  4LFA N;  4DR6 N;  4DV5 N;  3T1H N;  1XMQ N;  4DR2 N;  4JI6 N;  1HR0 N;  2F4V N;  2UXC N;  2UU9 N;  1HNX N;  1N34 N;  5IWA N;  4LF5 N;  1FJG N;  4DV3 N;  4DR1 N;  4LFB N;  4LF9 N;  4DV7 N;  1XNR N;  1N33 N;  4DUY N;  2UUA N;  4B3R N;  4JYA N;  1XNQ N;  4DR7 N;  4JI8 N;  5FLX d;  4DV0 N;  1HNZ N;  2UUB N;  4JI0 N;  1IBM N;  4GKJ N;  4JI5 N;  4DR5 N;  4X62 N;  1IBK N;  4DV1 N;  1IBL N;  3T1Y N;  5LMU N;  4GKK N;  5A2Q d;  4YY3 N;  2ZM6 N;  4B3S N;  4LF7 N;  2UUC N;  1XMO N;  4X65 N;  4OX9 N;  4B3M N;  4JI1 N;  4LFC N;  5IT9 d;  5BR8 N;  4X64 N;  1I94 N;  1N36 N;  4NXM N;  1N32 N;  4NXN N;  4JI2 N;  4JV5 N;  2UXD N;  4JI7 N;  1HNW N;  4AQY N;  1J5E N;  4LF6 N;  4DV4 N;  3J81 d;  4B3T N;  3J80 d;  3J7A T;  4LF4 N;  5LMN N;  4K0K N;  2E5L N;  2VQE N;  3OTO N;  2HHH N;  4DUZ N;  4KHP N;  4JI3 N;  2UXB N;  4DR4 N; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...