5FLXd

Mammalian 40s hcv-ires complex
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
51
structure length
51
Chain Sequence
QLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
pubmed doi rcsb
molecule tags Ribosome
source organism Hepatitis c virus
molecule keywords 18S RRNA
total genus 3
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 5flxd00
4DR1N 3J80d 1N34N 4AQYN 3J7AT 4LF6N 4LF7N 1XMQN 4X65N 4K0KN 4JI8N 4DR2N 4LFCN 3OTON 1N36N 5LMNN 4B3TN 1HNWN 4DV3N 4DV7N 2UXDN 4B3SN 4DV2N 5IT9d 4JI0N 4LF9N 4DR4N 4GKKN 1I94N 4YHHN 1XMON 4DV5N 1IBLN 4DR7N 4B3RN 4DV0N 4DUYN 4JI5N 4LFBN 2ZM6N 4DR5N 2F4VN 1IBKN 1N32N 4OX9N 4DR6N 4JI1N 4X62N 5FLXd 1XNQN 4LF4N 2VQEN 4JYAN 4JI3N 2E5LN 5BR8N 1FJGN 4DR3N 5LMUN 2UUAN 1HNZN 4NXMN 2UUCN 5IWAN 2HHHN 4JI6N 5A2Qd 4YY3N 4DUZN 1J5EN 4X66N 4NXNN 1HNXN 4KHPN 4DV1N 4JI2N 4LF5N 4JI4N 4X64N 4JI7N 4DV6N 4LFAN 4LF8N 3T1YN 2UXCN 3T1HN 1HR0N 2UXBN 4JV5N 4B3MN 1N33N 3J81d 3JAMd 4GKJN 1XNRN 1IBMN 2UU9N 2UUBN 4DV4N 2VQFN
chains in the Genus database with same CATH superfamily
4DR1N 3J80d 1N34N 4AQYN 3J7AT 4LF6N 4LF7N 1XMQN 4X65N 4K0KN 4JI8N 4DR2N 4LFCN 3OTON 1N36N 5LMNN 4B3TN 1HNWN 4DV3N 4DV7N 2UXDN 4B3SN 4DV2N 5IT9d 4JI0N 4LF9N 4DR4N 4GKKN 1I94N 4YHHN 1XMON 4DV5N 1IBLN 4DR7N 4B3RN 4DV0N 4DUYN 4JI5N 4LFBN 2ZM6N 4DR5N 2F4VN 1IBKN 1N32N 4OX9N 4DR6N 4JI1N 4X62N 5FLXd 1XNQN 4LF4N 2VQEN 4JYAN 4JI3N 2E5LN 5BR8N 1FJGN 4DR3N 5LMUN 2UUAN 1HNZN 4NXMN 2UUCN 5IWAN 2HHHN 4JI6N 5A2Qd 4YY3N 4DUZN 1J5EN 4X66N 4NXNN 1HNXN 4KHPN 4DV1N 4JI2N 4LF5N 4JI4N 4X64N 4JI7N 4DV6N 4LFAN 4LF8N 3T1YN 2UXCN 3T1HN 1HR0N 2UXBN 4JV5N 4B3MN 1N33N 3J81d 3JAMd 4GKJN 1XNRN 1IBMN 2UU9N 2UUBN 4DV4N 2VQFN
chains in the Genus database with same CATH topology
4DR1N 3J80d 1N34N 4AQYN 3J7AT 4LF6N 4LF7N 1XMQN 4X65N 4K0KN 4JI8N 4DR2N 4LFCN 3OTON 1N36N 5LMNN 4B3TN 1HNWN 4DV3N 4DV7N 2UXDN 4B3SN 4DV2N 5IT9d 4JI0N 4LF9N 4DR4N 4GKKN 1I94N 4YHHN 1XMON 4DV5N 1IBLN 4DR7N 4B3RN 4DV0N 4DUYN 4JI5N 4LFBN 2ZM6N 4DR5N 2F4VN 1IBKN 1N32N 4OX9N 4DR6N 4JI1N 4X62N 5FLXd 1XNQN 4LF4N 2VQEN 4JYAN 4JI3N 2E5LN 5BR8N 1FJGN 4DR3N 5LMUN 2UUAN 1HNZN 4NXMN 2UUCN 5IWAN 2HHHN 4JI6N 5A2Qd 4YY3N 4DUZN 1J5EN 4X66N 4NXNN 1HNXN 4KHPN 4DV1N 4JI2N 4LF5N 4JI4N 4X64N 4JI7N 4DV6N 4LFAN 4LF8N 3T1YN 2UXCN 3T1HN 1HR0N 2UXBN 4JV5N 4B3MN 1N33N 3J81d 3JAMd 4GKJN 1XNRN 1IBMN 2UU9N 2UUBN 4DV4N 2VQFN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR1 N;  3J80 d;  1N34 N;  4AQY N;  3J7A T;  4LF6 N;  4LF7 N;  1XMQ N;  4X65 N;  4K0K N;  4JI8 N;  4DR2 N;  4LFC N;  3OTO N;  1N36 N;  5LMN N;  4B3T N;  1HNW N;  4DV3 N;  4DV7 N;  2UXD N;  4B3S N;  4DV2 N;  5IT9 d;  4JI0 N;  4LF9 N;  4DR4 N;  4GKK N;  1I94 N;  4YHH N;  1XMO N;  4DV5 N;  1IBL N;  4DR7 N;  4B3R N;  4DV0 N;  4DUY N;  4JI5 N;  4LFB N;  2ZM6 N;  4DR5 N;  2F4V N;  1IBK N;  1N32 N;  4OX9 N;  4DR6 N;  4JI1 N;  4X62 N;  5FLX d;  1XNQ N;  4LF4 N;  2VQE N;  4JYA N;  4JI3 N;  2E5L N;  5BR8 N;  1FJG N;  4DR3 N;  5LMU N;  2UUA N;  1HNZ N;  4NXM N;  2UUC N;  5IWA N;  2HHH N;  4JI6 N;  5A2Q d;  4YY3 N;  4DUZ N;  1J5E N;  4X66 N;  4NXN N;  1HNX N;  4KHP N;  4DV1 N;  4JI2 N;  4LF5 N;  4JI4 N;  4X64 N;  4JI7 N;  4DV6 N;  4LFA N;  4LF8 N;  3T1Y N;  2UXC N;  3T1H N;  1HR0 N;  2UXB N;  4JV5 N;  4B3M N;  1N33 N;  3J81 d;  3JAM d;  4GKJ N;  1XNR N;  1IBM N;  2UU9 N;  2UUB N;  4DV4 N;  2VQF N; 
#chains in the Genus database with same CATH topology
 4DR1 N;  3J80 d;  1N34 N;  4AQY N;  3J7A T;  4LF6 N;  4LF7 N;  1XMQ N;  4X65 N;  4K0K N;  4JI8 N;  4DR2 N;  4LFC N;  3OTO N;  1N36 N;  5LMN N;  4B3T N;  1HNW N;  4DV3 N;  4DV7 N;  2UXD N;  4B3S N;  4DV2 N;  5IT9 d;  4JI0 N;  4LF9 N;  4DR4 N;  4GKK N;  1I94 N;  4YHH N;  1XMO N;  4DV5 N;  1IBL N;  4DR7 N;  4B3R N;  4DV0 N;  4DUY N;  4JI5 N;  4LFB N;  2ZM6 N;  4DR5 N;  2F4V N;  1IBK N;  1N32 N;  4OX9 N;  4DR6 N;  4JI1 N;  4X62 N;  5FLX d;  1XNQ N;  4LF4 N;  2VQE N;  4JYA N;  4JI3 N;  2E5L N;  5BR8 N;  1FJG N;  4DR3 N;  5LMU N;  2UUA N;  1HNZ N;  4NXM N;  2UUC N;  5IWA N;  2HHH N;  4JI6 N;  5A2Q d;  4YY3 N;  4DUZ N;  1J5E N;  4X66 N;  4NXN N;  1HNX N;  4KHP N;  4DV1 N;  4JI2 N;  4LF5 N;  4JI4 N;  4X64 N;  4JI7 N;  4DV6 N;  4LFA N;  4LF8 N;  3T1Y N;  2UXC N;  3T1H N;  1HR0 N;  2UXB N;  4JV5 N;  4B3M N;  1N33 N;  3J81 d;  3JAM d;  4GKJ N;  1XNR N;  1IBM N;  2UU9 N;  2UUB N;  4DV4 N;  2VQF N; 
#chains in the Genus database with same CATH homology
 4DR1 N;  3J80 d;  1N34 N;  4AQY N;  3J7A T;  4LF6 N;  4LF7 N;  1XMQ N;  4X65 N;  4K0K N;  4JI8 N;  4DR2 N;  4LFC N;  3OTO N;  1N36 N;  5LMN N;  4B3T N;  1HNW N;  4DV3 N;  4DV7 N;  2UXD N;  4B3S N;  4DV2 N;  5IT9 d;  4JI0 N;  4LF9 N;  4DR4 N;  4GKK N;  1I94 N;  4YHH N;  1XMO N;  4DV5 N;  1IBL N;  4DR7 N;  4B3R N;  4DV0 N;  4DUY N;  4JI5 N;  4LFB N;  2ZM6 N;  4DR5 N;  2F4V N;  1IBK N;  1N32 N;  4OX9 N;  4DR6 N;  4JI1 N;  4X62 N;  5FLX d;  1XNQ N;  4LF4 N;  2VQE N;  4JYA N;  4JI3 N;  2E5L N;  5BR8 N;  1FJG N;  4DR3 N;  5LMU N;  2UUA N;  1HNZ N;  4NXM N;  2UUC N;  5IWA N;  2HHH N;  4JI6 N;  5A2Q d;  4YY3 N;  4DUZ N;  1J5E N;  4X66 N;  4NXN N;  1HNX N;  4KHP N;  4DV1 N;  4JI2 N;  4LF5 N;  4JI4 N;  4X64 N;  4JI7 N;  4DV6 N;  4LFA N;  4LF8 N;  3T1Y N;  2UXC N;  3T1H N;  1HR0 N;  2UXB N;  4JV5 N;  4B3M N;  1N33 N;  3J81 d;  3JAM d;  4GKJ N;  1XNR N;  1IBM N;  2UU9 N;  2UUB N;  4DV4 N;  2VQF N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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