1N33N

Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2002-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 1n33N00
4LF6N 4NXMN 4DR7N 5LMNN 4X62N 4B3MN 4B3SN 4DR1N 1J5EN 1HNXN 4K0KN 4JI4N 2UUBN 4GKKN 4JI8N 4DV7N 1IBMN 2E5LN 1HR0N 4JYAN 4OX9N 4DV1N 4NXNN 5LMUN 5IWAN 4DR4N 4JI2N 4X66N 4LF5N 4X65N 4LFBN 1N36N 3J81d 4LFAN 4B3TN 4LF4N 1FJGN 4DV0N 3T1YN 3OTON 5FLXd 5IT9d 3J80d 1XNRN 3JAMd 4DV6N 4B3RN 4DV3N 4DR3N 5A2Qd 4DUYN 4YY3N 4DR2N 3T1HN 2F4VN 2UU9N 4DR5N 4JI3N 4JV5N 4DV5N 1XMQN 2UXCN 1N34N 1N33N 2UXDN 4JI5N 2UXBN 4YHHN 5BR8N 4LF8N 1N32N 1XNQN 1IBKN 2UUCN 4JI7N 1I94N 4JI1N 4LFCN 1HNWN 4JI0N 4GKJN 2VQEN 3J7AT 4LF9N 1XMON 4DR6N 1HNZN 4LF7N 4DV2N 2UUAN 4X64N 4KHPN 4AQYN 4DUZN 2ZM6N 2HHHN 4JI6N 1IBLN 4DV4N 2VQFN
chains in the Genus database with same CATH superfamily
4LF6N 4NXMN 4DR7N 5LMNN 4X62N 4B3MN 4B3SN 4DR1N 1J5EN 1HNXN 4K0KN 4JI4N 2UUBN 4GKKN 4JI8N 4DV7N 1IBMN 2E5LN 1HR0N 4JYAN 4OX9N 4DV1N 4NXNN 5LMUN 5IWAN 4DR4N 4JI2N 4X66N 4LF5N 4X65N 4LFBN 1N36N 3J81d 4LFAN 4B3TN 4LF4N 1FJGN 4DV0N 3T1YN 3OTON 5FLXd 5IT9d 3J80d 1XNRN 3JAMd 4DV6N 4B3RN 4DV3N 4DR3N 5A2Qd 4DUYN 4YY3N 4DR2N 3T1HN 2F4VN 2UU9N 4DR5N 4JI3N 4JV5N 4DV5N 1XMQN 2UXCN 1N34N 1N33N 2UXDN 4JI5N 2UXBN 4YHHN 5BR8N 4LF8N 1N32N 1XNQN 1IBKN 2UUCN 4JI7N 1I94N 4JI1N 4LFCN 1HNWN 4JI0N 4GKJN 2VQEN 3J7AT 4LF9N 1XMON 4DR6N 1HNZN 4LF7N 4DV2N 2UUAN 4X64N 4KHPN 4AQYN 4DUZN 2ZM6N 2HHHN 4JI6N 1IBLN 4DV4N 2VQFN
chains in the Genus database with same CATH topology
4LF6N 4NXMN 4DR7N 5LMNN 4X62N 4B3MN 4B3SN 4DR1N 1J5EN 1HNXN 4K0KN 4JI4N 2UUBN 4GKKN 4JI8N 4DV7N 1IBMN 2E5LN 1HR0N 4JYAN 4OX9N 4DV1N 4NXNN 5LMUN 5IWAN 4DR4N 4JI2N 4X66N 4LF5N 4X65N 4LFBN 1N36N 3J81d 4LFAN 4B3TN 4LF4N 1FJGN 4DV0N 3T1YN 3OTON 5FLXd 5IT9d 3J80d 1XNRN 3JAMd 4DV6N 4B3RN 4DV3N 4DR3N 5A2Qd 4DUYN 4YY3N 4DR2N 3T1HN 2F4VN 2UU9N 4DR5N 4JI3N 4JV5N 4DV5N 1XMQN 2UXCN 1N34N 1N33N 2UXDN 4JI5N 2UXBN 4YHHN 5BR8N 4LF8N 1N32N 1XNQN 1IBKN 2UUCN 4JI7N 1I94N 4JI1N 4LFCN 1HNWN 4JI0N 4GKJN 2VQEN 3J7AT 4LF9N 1XMON 4DR6N 1HNZN 4LF7N 4DV2N 2UUAN 4X64N 4KHPN 4AQYN 4DUZN 2ZM6N 2HHHN 4JI6N 1IBLN 4DV4N 2VQFN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LF6 N;  4NXM N;  4DR7 N;  5LMN N;  4X62 N;  4B3M N;  4B3S N;  4DR1 N;  1J5E N;  1HNX N;  4K0K N;  4JI4 N;  2UUB N;  4GKK N;  4JI8 N;  4DV7 N;  1IBM N;  2E5L N;  1HR0 N;  4JYA N;  4OX9 N;  4DV1 N;  4NXN N;  5LMU N;  5IWA N;  4DR4 N;  4JI2 N;  4X66 N;  4LF5 N;  4X65 N;  4LFB N;  1N36 N;  3J81 d;  4LFA N;  4B3T N;  4LF4 N;  1FJG N;  4DV0 N;  3T1Y N;  3OTO N;  5FLX d;  5IT9 d;  3J80 d;  1XNR N;  3JAM d;  4DV6 N;  4B3R N;  4DV3 N;  4DR3 N;  5A2Q d;  4DUY N;  4YY3 N;  4DR2 N;  3T1H N;  2F4V N;  2UU9 N;  4DR5 N;  4JI3 N;  4JV5 N;  4DV5 N;  1XMQ N;  2UXC N;  1N34 N;  1N33 N;  2UXD N;  4JI5 N;  2UXB N;  4YHH N;  5BR8 N;  4LF8 N;  1N32 N;  1XNQ N;  1IBK N;  2UUC N;  4JI7 N;  1I94 N;  4JI1 N;  4LFC N;  1HNW N;  4JI0 N;  4GKJ N;  2VQE N;  3J7A T;  4LF9 N;  1XMO N;  4DR6 N;  1HNZ N;  4LF7 N;  4DV2 N;  2UUA N;  4X64 N;  4KHP N;  4AQY N;  4DUZ N;  2ZM6 N;  2HHH N;  4JI6 N;  1IBL N;  4DV4 N;  2VQF N; 
#chains in the Genus database with same CATH topology
 4LF6 N;  4NXM N;  4DR7 N;  5LMN N;  4X62 N;  4B3M N;  4B3S N;  4DR1 N;  1J5E N;  1HNX N;  4K0K N;  4JI4 N;  2UUB N;  4GKK N;  4JI8 N;  4DV7 N;  1IBM N;  2E5L N;  1HR0 N;  4JYA N;  4OX9 N;  4DV1 N;  4NXN N;  5LMU N;  5IWA N;  4DR4 N;  4JI2 N;  4X66 N;  4LF5 N;  4X65 N;  4LFB N;  1N36 N;  3J81 d;  4LFA N;  4B3T N;  4LF4 N;  1FJG N;  4DV0 N;  3T1Y N;  3OTO N;  5FLX d;  5IT9 d;  3J80 d;  1XNR N;  3JAM d;  4DV6 N;  4B3R N;  4DV3 N;  4DR3 N;  5A2Q d;  4DUY N;  4YY3 N;  4DR2 N;  3T1H N;  2F4V N;  2UU9 N;  4DR5 N;  4JI3 N;  4JV5 N;  4DV5 N;  1XMQ N;  2UXC N;  1N34 N;  1N33 N;  2UXD N;  4JI5 N;  2UXB N;  4YHH N;  5BR8 N;  4LF8 N;  1N32 N;  1XNQ N;  1IBK N;  2UUC N;  4JI7 N;  1I94 N;  4JI1 N;  4LFC N;  1HNW N;  4JI0 N;  4GKJ N;  2VQE N;  3J7A T;  4LF9 N;  1XMO N;  4DR6 N;  1HNZ N;  4LF7 N;  4DV2 N;  2UUA N;  4X64 N;  4KHP N;  4AQY N;  4DUZ N;  2ZM6 N;  2HHH N;  4JI6 N;  1IBL N;  4DV4 N;  2VQF N; 
#chains in the Genus database with same CATH homology
 4LF6 N;  4NXM N;  4DR7 N;  5LMN N;  4X62 N;  4B3M N;  4B3S N;  4DR1 N;  1J5E N;  1HNX N;  4K0K N;  4JI4 N;  2UUB N;  4GKK N;  4JI8 N;  4DV7 N;  1IBM N;  2E5L N;  1HR0 N;  4JYA N;  4OX9 N;  4DV1 N;  4NXN N;  5LMU N;  5IWA N;  4DR4 N;  4JI2 N;  4X66 N;  4LF5 N;  4X65 N;  4LFB N;  1N36 N;  3J81 d;  4LFA N;  4B3T N;  4LF4 N;  1FJG N;  4DV0 N;  3T1Y N;  3OTO N;  5FLX d;  5IT9 d;  3J80 d;  1XNR N;  3JAM d;  4DV6 N;  4B3R N;  4DV3 N;  4DR3 N;  5A2Q d;  4DUY N;  4YY3 N;  4DR2 N;  3T1H N;  2F4V N;  2UU9 N;  4DR5 N;  4JI3 N;  4JV5 N;  4DV5 N;  1XMQ N;  2UXC N;  1N34 N;  1N33 N;  2UXD N;  4JI5 N;  2UXB N;  4YHH N;  5BR8 N;  4LF8 N;  1N32 N;  1XNQ N;  1IBK N;  2UUC N;  4JI7 N;  1I94 N;  4JI1 N;  4LFC N;  1HNW N;  4JI0 N;  4GKJ N;  2VQE N;  3J7A T;  4LF9 N;  1XMO N;  4DR6 N;  1HNZ N;  4LF7 N;  4DV2 N;  2UUA N;  4X64 N;  4KHP N;  4AQY N;  4DUZ N;  2ZM6 N;  2HHH N;  4JI6 N;  1IBL N;  4DV4 N;  2VQF N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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