4JI3N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 10
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ji3N00
1N32N 4LF6N 4DV0N 4B3TN 4JI4N 2VQFN 4B3SN 4LF7N 4X66N 2E5LN 2F4VN 4B3MN 1HR0N 5IT9d 4JI6N 5FLXd 4YHHN 1XMON 4LF8N 4DV6N 1J5EN 4B3RN 4LFBN 1XNQN 4DR1N 1XNRN 4NXNN 4AQYN 2UXCN 2VQEN 5LMNN 4DV4N 4GKJN 4K0KN 1N36N 4JI8N 1N34N 1N33N 2UXDN 3T1YN 4JI5N 4JI3N 4LFCN 2UU9N 5LMUN 4JI2N 4OX9N 1FJGN 5A2Qd 5BR8N 5IWAN 3JAMd 4JI7N 4YY3N 1IBMN 4JI1N 4DR2N 4DR4N 4NXMN 1HNWN 3J81d 1I94N 1IBLN 4DR6N 4KHPN 1HNZN 2UXBN 3T1HN 4DV1N 1HNXN 1XMQN 4DUZN 4DV3N 4DR3N 1IBKN 4DR7N 3J80d 2HHHN 4JYAN 3OTON 4DV7N 2UUBN 4X64N 4LFAN 4DV5N 4X65N 4X62N 2ZM6N 4DV2N 2UUAN 4LF4N 4LF9N 2UUCN 4JI0N 4DUYN 4LF5N 4DR5N 4GKKN 4JV5N 3J7AT
chains in the Genus database with same CATH superfamily
1N32N 4LF6N 4DV0N 4B3TN 4JI4N 2VQFN 4B3SN 4LF7N 4X66N 2E5LN 2F4VN 4B3MN 1HR0N 5IT9d 4JI6N 5FLXd 4YHHN 1XMON 4LF8N 4DV6N 1J5EN 4B3RN 4LFBN 1XNQN 4DR1N 1XNRN 4NXNN 4AQYN 2UXCN 2VQEN 5LMNN 4DV4N 4GKJN 4K0KN 1N36N 4JI8N 1N34N 1N33N 2UXDN 3T1YN 4JI5N 4JI3N 4LFCN 2UU9N 5LMUN 4JI2N 4OX9N 1FJGN 5A2Qd 5BR8N 5IWAN 3JAMd 4JI7N 4YY3N 1IBMN 4JI1N 4DR2N 4DR4N 4NXMN 1HNWN 3J81d 1I94N 1IBLN 4DR6N 4KHPN 1HNZN 2UXBN 3T1HN 4DV1N 1HNXN 1XMQN 4DUZN 4DV3N 4DR3N 1IBKN 4DR7N 3J80d 2HHHN 4JYAN 3OTON 4DV7N 2UUBN 4X64N 4LFAN 4DV5N 4X65N 4X62N 2ZM6N 4DV2N 2UUAN 4LF4N 4LF9N 2UUCN 4JI0N 4DUYN 4LF5N 4DR5N 4GKKN 4JV5N 3J7AT
chains in the Genus database with same CATH topology
1N32N 4LF6N 4DV0N 4B3TN 4JI4N 2VQFN 4B3SN 4LF7N 4X66N 2E5LN 2F4VN 4B3MN 1HR0N 5IT9d 4JI6N 5FLXd 4YHHN 1XMON 4LF8N 4DV6N 1J5EN 4B3RN 4LFBN 1XNQN 4DR1N 1XNRN 4NXNN 4AQYN 2UXCN 2VQEN 5LMNN 4DV4N 4GKJN 4K0KN 1N36N 4JI8N 1N34N 1N33N 2UXDN 3T1YN 4JI5N 4JI3N 4LFCN 2UU9N 5LMUN 4JI2N 4OX9N 1FJGN 5A2Qd 5BR8N 5IWAN 3JAMd 4JI7N 4YY3N 1IBMN 4JI1N 4DR2N 4DR4N 4NXMN 1HNWN 3J81d 1I94N 1IBLN 4DR6N 4KHPN 1HNZN 2UXBN 3T1HN 4DV1N 1HNXN 1XMQN 4DUZN 4DV3N 4DR3N 1IBKN 4DR7N 3J80d 2HHHN 4JYAN 3OTON 4DV7N 2UUBN 4X64N 4LFAN 4DV5N 4X65N 4X62N 2ZM6N 4DV2N 2UUAN 4LF4N 4LF9N 2UUCN 4JI0N 4DUYN 4LF5N 4DR5N 4GKKN 4JV5N 3J7AT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N32 N;  4LF6 N;  4DV0 N;  4B3T N;  4JI4 N;  2VQF N;  4B3S N;  4LF7 N;  4X66 N;  2E5L N;  2F4V N;  4B3M N;  1HR0 N;  5IT9 d;  4JI6 N;  5FLX d;  4YHH N;  1XMO N;  4LF8 N;  4DV6 N;  1J5E N;  4B3R N;  4LFB N;  1XNQ N;  4DR1 N;  1XNR N;  4NXN N;  4AQY N;  2UXC N;  2VQE N;  5LMN N;  4DV4 N;  4GKJ N;  4K0K N;  1N36 N;  4JI8 N;  1N34 N;  1N33 N;  2UXD N;  3T1Y N;  4JI5 N;  4JI3 N;  4LFC N;  2UU9 N;  5LMU N;  4JI2 N;  4OX9 N;  1FJG N;  5A2Q d;  5BR8 N;  5IWA N;  3JAM d;  4JI7 N;  4YY3 N;  1IBM N;  4JI1 N;  4DR2 N;  4DR4 N;  4NXM N;  1HNW N;  3J81 d;  1I94 N;  1IBL N;  4DR6 N;  4KHP N;  1HNZ N;  2UXB N;  3T1H N;  4DV1 N;  1HNX N;  1XMQ N;  4DUZ N;  4DV3 N;  4DR3 N;  1IBK N;  4DR7 N;  3J80 d;  2HHH N;  4JYA N;  3OTO N;  4DV7 N;  2UUB N;  4X64 N;  4LFA N;  4DV5 N;  4X65 N;  4X62 N;  2ZM6 N;  4DV2 N;  2UUA N;  4LF4 N;  4LF9 N;  2UUC N;  4JI0 N;  4DUY N;  4LF5 N;  4DR5 N;  4GKK N;  4JV5 N;  3J7A T; 
#chains in the Genus database with same CATH topology
 1N32 N;  4LF6 N;  4DV0 N;  4B3T N;  4JI4 N;  2VQF N;  4B3S N;  4LF7 N;  4X66 N;  2E5L N;  2F4V N;  4B3M N;  1HR0 N;  5IT9 d;  4JI6 N;  5FLX d;  4YHH N;  1XMO N;  4LF8 N;  4DV6 N;  1J5E N;  4B3R N;  4LFB N;  1XNQ N;  4DR1 N;  1XNR N;  4NXN N;  4AQY N;  2UXC N;  2VQE N;  5LMN N;  4DV4 N;  4GKJ N;  4K0K N;  1N36 N;  4JI8 N;  1N34 N;  1N33 N;  2UXD N;  3T1Y N;  4JI5 N;  4JI3 N;  4LFC N;  2UU9 N;  5LMU N;  4JI2 N;  4OX9 N;  1FJG N;  5A2Q d;  5BR8 N;  5IWA N;  3JAM d;  4JI7 N;  4YY3 N;  1IBM N;  4JI1 N;  4DR2 N;  4DR4 N;  4NXM N;  1HNW N;  3J81 d;  1I94 N;  1IBL N;  4DR6 N;  4KHP N;  1HNZ N;  2UXB N;  3T1H N;  4DV1 N;  1HNX N;  1XMQ N;  4DUZ N;  4DV3 N;  4DR3 N;  1IBK N;  4DR7 N;  3J80 d;  2HHH N;  4JYA N;  3OTO N;  4DV7 N;  2UUB N;  4X64 N;  4LFA N;  4DV5 N;  4X65 N;  4X62 N;  2ZM6 N;  4DV2 N;  2UUA N;  4LF4 N;  4LF9 N;  2UUC N;  4JI0 N;  4DUY N;  4LF5 N;  4DR5 N;  4GKK N;  4JV5 N;  3J7A T; 
#chains in the Genus database with same CATH homology
 1N32 N;  4LF6 N;  4DV0 N;  4B3T N;  4JI4 N;  2VQF N;  4B3S N;  4LF7 N;  4X66 N;  2E5L N;  2F4V N;  4B3M N;  1HR0 N;  5IT9 d;  4JI6 N;  5FLX d;  4YHH N;  1XMO N;  4LF8 N;  4DV6 N;  1J5E N;  4B3R N;  4LFB N;  1XNQ N;  4DR1 N;  1XNR N;  4NXN N;  4AQY N;  2UXC N;  2VQE N;  5LMN N;  4DV4 N;  4GKJ N;  4K0K N;  1N36 N;  4JI8 N;  1N34 N;  1N33 N;  2UXD N;  3T1Y N;  4JI5 N;  4JI3 N;  4LFC N;  2UU9 N;  5LMU N;  4JI2 N;  4OX9 N;  1FJG N;  5A2Q d;  5BR8 N;  5IWA N;  3JAM d;  4JI7 N;  4YY3 N;  1IBM N;  4JI1 N;  4DR2 N;  4DR4 N;  4NXM N;  1HNW N;  3J81 d;  1I94 N;  1IBL N;  4DR6 N;  4KHP N;  1HNZ N;  2UXB N;  3T1H N;  4DV1 N;  1HNX N;  1XMQ N;  4DUZ N;  4DV3 N;  4DR3 N;  1IBK N;  4DR7 N;  3J80 d;  2HHH N;  4JYA N;  3OTO N;  4DV7 N;  2UUB N;  4X64 N;  4LFA N;  4DV5 N;  4X65 N;  4X62 N;  2ZM6 N;  4DV2 N;  2UUA N;  4LF4 N;  4LF9 N;  2UUC N;  4JI0 N;  4DUY N;  4LF5 N;  4DR5 N;  4GKK N;  4JV5 N;  3J7A T; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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