5A2Qd

Structure of the hcv ires bound to the human ribosome
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
55
structure length
55
Chain Sequence
GHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cryo-Em Structure of Hepatitis C Virus Ires Bound to the Human Ribosome at 3.9 Angstrom Resolution
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 18S RRNA
total genus 6
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2015-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
d PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 5a2qd00
4JI8N 4DR1N 4JI5N 5FLXd 4KHPN 5BR8N 4DV0N 4LFBN 4JI4N 4DV1N 2UUAN 4LF8N 4B3SN 4JI6N 4LF5N 4JI3N 1XMQN 2UXBN 4X62N 4JI0N 1IBMN 4LF4N 1HNZN 1I94N 4X66N 4DR3N 2UUCN 4NXNN 4DV3N 4DR7N 2UUBN 4K0KN 4DR6N 4LFCN 2UU9N 4GKKN 1IBKN 1N33N 4NXMN 4LF9N 1HR0N 4LF6N 4YHHN 4DR5N 2VQEN 4GKJN 1J5EN 1HNXN 4B3MN 1XMON 4JI7N 1HNWN 4JI1N 4DR2N 4DV7N 4LFAN 4DR4N 4DV4N 4X65N 5IWAN 5LMNN 1N36N 1FJGN 4YY3N 3J80d 4LF7N 3T1HN 4B3TN 3JAMd 1IBLN 2UXCN 4JYAN 4X64N 3T1YN 4JV5N 1N34N 4DV5N 2VQFN 4DUYN 4DV6N 1XNRN 5A2Qd 5IT9d 1XNQN 2ZM6N 3J7AT 4JI2N 4DV2N 4AQYN 2HHHN 4B3RN 2E5LN 4OX9N 2UXDN 2F4VN 5LMUN 3J81d 3OTON 1N32N 4DUZN
chains in the Genus database with same CATH superfamily
4JI8N 4DR1N 4JI5N 5FLXd 4KHPN 5BR8N 4DV0N 4LFBN 4JI4N 4DV1N 2UUAN 4LF8N 4B3SN 4JI6N 4LF5N 4JI3N 1XMQN 2UXBN 4X62N 4JI0N 1IBMN 4LF4N 1HNZN 1I94N 4X66N 4DR3N 2UUCN 4NXNN 4DV3N 4DR7N 2UUBN 4K0KN 4DR6N 4LFCN 2UU9N 4GKKN 1IBKN 1N33N 4NXMN 4LF9N 1HR0N 4LF6N 4YHHN 4DR5N 2VQEN 4GKJN 1J5EN 1HNXN 4B3MN 1XMON 4JI7N 1HNWN 4JI1N 4DR2N 4DV7N 4LFAN 4DR4N 4DV4N 4X65N 5IWAN 5LMNN 1N36N 1FJGN 4YY3N 3J80d 4LF7N 3T1HN 4B3TN 3JAMd 1IBLN 2UXCN 4JYAN 4X64N 3T1YN 4JV5N 1N34N 4DV5N 2VQFN 4DUYN 4DV6N 1XNRN 5A2Qd 5IT9d 1XNQN 2ZM6N 3J7AT 4JI2N 4DV2N 4AQYN 2HHHN 4B3RN 2E5LN 4OX9N 2UXDN 2F4VN 5LMUN 3J81d 3OTON 1N32N 4DUZN
chains in the Genus database with same CATH topology
4JI8N 4DR1N 4JI5N 5FLXd 4KHPN 5BR8N 4DV0N 4LFBN 4JI4N 4DV1N 2UUAN 4LF8N 4B3SN 4JI6N 4LF5N 4JI3N 1XMQN 2UXBN 4X62N 4JI0N 1IBMN 4LF4N 1HNZN 1I94N 4X66N 4DR3N 2UUCN 4NXNN 4DV3N 4DR7N 2UUBN 4K0KN 4DR6N 4LFCN 2UU9N 4GKKN 1IBKN 1N33N 4NXMN 4LF9N 1HR0N 4LF6N 4YHHN 4DR5N 2VQEN 4GKJN 1J5EN 1HNXN 4B3MN 1XMON 4JI7N 1HNWN 4JI1N 4DR2N 4DV7N 4LFAN 4DR4N 4DV4N 4X65N 5IWAN 5LMNN 1N36N 1FJGN 4YY3N 3J80d 4LF7N 3T1HN 4B3TN 3JAMd 1IBLN 2UXCN 4JYAN 4X64N 3T1YN 4JV5N 1N34N 4DV5N 2VQFN 4DUYN 4DV6N 1XNRN 5A2Qd 5IT9d 1XNQN 2ZM6N 3J7AT 4JI2N 4DV2N 4AQYN 2HHHN 4B3RN 2E5LN 4OX9N 2UXDN 2F4VN 5LMUN 3J81d 3OTON 1N32N 4DUZN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI8 N;  4DR1 N;  4JI5 N;  5FLX d;  4KHP N;  5BR8 N;  4DV0 N;  4LFB N;  4JI4 N;  4DV1 N;  2UUA N;  4LF8 N;  4B3S N;  4JI6 N;  4LF5 N;  4JI3 N;  1XMQ N;  2UXB N;  4X62 N;  4JI0 N;  1IBM N;  4LF4 N;  1HNZ N;  1I94 N;  4X66 N;  4DR3 N;  2UUC N;  4NXN N;  4DV3 N;  4DR7 N;  2UUB N;  4K0K N;  4DR6 N;  4LFC N;  2UU9 N;  4GKK N;  1IBK N;  1N33 N;  4NXM N;  4LF9 N;  1HR0 N;  4LF6 N;  4YHH N;  4DR5 N;  2VQE N;  4GKJ N;  1J5E N;  1HNX N;  4B3M N;  1XMO N;  4JI7 N;  1HNW N;  4JI1 N;  4DR2 N;  4DV7 N;  4LFA N;  4DR4 N;  4DV4 N;  4X65 N;  5IWA N;  5LMN N;  1N36 N;  1FJG N;  4YY3 N;  3J80 d;  4LF7 N;  3T1H N;  4B3T N;  3JAM d;  1IBL N;  2UXC N;  4JYA N;  4X64 N;  3T1Y N;  4JV5 N;  1N34 N;  4DV5 N;  2VQF N;  4DUY N;  4DV6 N;  1XNR N;  5A2Q d;  5IT9 d;  1XNQ N;  2ZM6 N;  3J7A T;  4JI2 N;  4DV2 N;  4AQY N;  2HHH N;  4B3R N;  2E5L N;  4OX9 N;  2UXD N;  2F4V N;  5LMU N;  3J81 d;  3OTO N;  1N32 N;  4DUZ N; 
#chains in the Genus database with same CATH topology
 4JI8 N;  4DR1 N;  4JI5 N;  5FLX d;  4KHP N;  5BR8 N;  4DV0 N;  4LFB N;  4JI4 N;  4DV1 N;  2UUA N;  4LF8 N;  4B3S N;  4JI6 N;  4LF5 N;  4JI3 N;  1XMQ N;  2UXB N;  4X62 N;  4JI0 N;  1IBM N;  4LF4 N;  1HNZ N;  1I94 N;  4X66 N;  4DR3 N;  2UUC N;  4NXN N;  4DV3 N;  4DR7 N;  2UUB N;  4K0K N;  4DR6 N;  4LFC N;  2UU9 N;  4GKK N;  1IBK N;  1N33 N;  4NXM N;  4LF9 N;  1HR0 N;  4LF6 N;  4YHH N;  4DR5 N;  2VQE N;  4GKJ N;  1J5E N;  1HNX N;  4B3M N;  1XMO N;  4JI7 N;  1HNW N;  4JI1 N;  4DR2 N;  4DV7 N;  4LFA N;  4DR4 N;  4DV4 N;  4X65 N;  5IWA N;  5LMN N;  1N36 N;  1FJG N;  4YY3 N;  3J80 d;  4LF7 N;  3T1H N;  4B3T N;  3JAM d;  1IBL N;  2UXC N;  4JYA N;  4X64 N;  3T1Y N;  4JV5 N;  1N34 N;  4DV5 N;  2VQF N;  4DUY N;  4DV6 N;  1XNR N;  5A2Q d;  5IT9 d;  1XNQ N;  2ZM6 N;  3J7A T;  4JI2 N;  4DV2 N;  4AQY N;  2HHH N;  4B3R N;  2E5L N;  4OX9 N;  2UXD N;  2F4V N;  5LMU N;  3J81 d;  3OTO N;  1N32 N;  4DUZ N; 
#chains in the Genus database with same CATH homology
 4JI8 N;  4DR1 N;  4JI5 N;  5FLX d;  4KHP N;  5BR8 N;  4DV0 N;  4LFB N;  4JI4 N;  4DV1 N;  2UUA N;  4LF8 N;  4B3S N;  4JI6 N;  4LF5 N;  4JI3 N;  1XMQ N;  2UXB N;  4X62 N;  4JI0 N;  1IBM N;  4LF4 N;  1HNZ N;  1I94 N;  4X66 N;  4DR3 N;  2UUC N;  4NXN N;  4DV3 N;  4DR7 N;  2UUB N;  4K0K N;  4DR6 N;  4LFC N;  2UU9 N;  4GKK N;  1IBK N;  1N33 N;  4NXM N;  4LF9 N;  1HR0 N;  4LF6 N;  4YHH N;  4DR5 N;  2VQE N;  4GKJ N;  1J5E N;  1HNX N;  4B3M N;  1XMO N;  4JI7 N;  1HNW N;  4JI1 N;  4DR2 N;  4DV7 N;  4LFA N;  4DR4 N;  4DV4 N;  4X65 N;  5IWA N;  5LMN N;  1N36 N;  1FJG N;  4YY3 N;  3J80 d;  4LF7 N;  3T1H N;  4B3T N;  3JAM d;  1IBL N;  2UXC N;  4JYA N;  4X64 N;  3T1Y N;  4JV5 N;  1N34 N;  4DV5 N;  2VQF N;  4DUY N;  4DV6 N;  1XNR N;  5A2Q d;  5IT9 d;  1XNQ N;  2ZM6 N;  3J7A T;  4JI2 N;  4DV2 N;  4AQY N;  2HHH N;  4B3R N;  2E5L N;  4OX9 N;  2UXD N;  2F4V N;  5LMU N;  3J81 d;  3OTO N;  1N32 N;  4DUZ N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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