2UUAN

Structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guc-codon in the a-site and paromomycin.
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RRNA
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 2uuaN00
4DV3N 4DV2N 4LF6N 4B3SN 4B3MN 4JI4N 5LMNN 5BR8N 1XNQN 4X64N 4LF7N 4DV6N 5A2Qd 4DR1N 1XMON 4X65N 2VQEN 4DR6N 4KHPN 4LFCN 4JI5N 4LF4N 4X62N 1IBLN 4LF9N 1HNWN 2F4VN 1N32N 2ZM6N 1N34N 3J80d 1N36N 1IBMN 3OTON 2UXBN 1IBKN 2UXCN 4OX9N 4LF8N 4DUZN 4LF5N 4YHHN 4JV5N 2E5LN 3J7AT 4JI8N 4DV1N 2UUBN 1J5EN 1XNRN 5FLXd 5IT9d 2UXDN 4AQYN 4JI7N 4JI6N 4B3RN 4DV4N 4LFBN 4DR4N 4DV0N 3J81d 1HNXN 4B3TN 4JYAN 2VQFN 4DR5N 3T1YN 5LMUN 1HR0N 4JI1N 4JI0N 1N33N 2UU9N 3T1HN 4NXMN 4DV7N 4DR7N 4DUYN 4DV5N 4NXNN 4JI2N 4GKJN 4GKKN 1XMQN 3JAMd 4JI3N 1HNZN 1I94N 4K0KN 2UUCN 2HHHN 4YY3N 2UUAN 4DR3N 5IWAN 1FJGN 4LFAN 4X66N 4DR2N
chains in the Genus database with same CATH superfamily
4DV3N 4DV2N 4LF6N 4B3SN 4B3MN 4JI4N 5LMNN 5BR8N 1XNQN 4X64N 4LF7N 4DV6N 5A2Qd 4DR1N 1XMON 4X65N 2VQEN 4DR6N 4KHPN 4LFCN 4JI5N 4LF4N 4X62N 1IBLN 4LF9N 1HNWN 2F4VN 1N32N 2ZM6N 1N34N 3J80d 1N36N 1IBMN 3OTON 2UXBN 1IBKN 2UXCN 4OX9N 4LF8N 4DUZN 4LF5N 4YHHN 4JV5N 2E5LN 3J7AT 4JI8N 4DV1N 2UUBN 1J5EN 1XNRN 5FLXd 5IT9d 2UXDN 4AQYN 4JI7N 4JI6N 4B3RN 4DV4N 4LFBN 4DR4N 4DV0N 3J81d 1HNXN 4B3TN 4JYAN 2VQFN 4DR5N 3T1YN 5LMUN 1HR0N 4JI1N 4JI0N 1N33N 2UU9N 3T1HN 4NXMN 4DV7N 4DR7N 4DUYN 4DV5N 4NXNN 4JI2N 4GKJN 4GKKN 1XMQN 3JAMd 4JI3N 1HNZN 1I94N 4K0KN 2UUCN 2HHHN 4YY3N 2UUAN 4DR3N 5IWAN 1FJGN 4LFAN 4X66N 4DR2N
chains in the Genus database with same CATH topology
4DV3N 4DV2N 4LF6N 4B3SN 4B3MN 4JI4N 5LMNN 5BR8N 1XNQN 4X64N 4LF7N 4DV6N 5A2Qd 4DR1N 1XMON 4X65N 2VQEN 4DR6N 4KHPN 4LFCN 4JI5N 4LF4N 4X62N 1IBLN 4LF9N 1HNWN 2F4VN 1N32N 2ZM6N 1N34N 3J80d 1N36N 1IBMN 3OTON 2UXBN 1IBKN 2UXCN 4OX9N 4LF8N 4DUZN 4LF5N 4YHHN 4JV5N 2E5LN 3J7AT 4JI8N 4DV1N 2UUBN 1J5EN 1XNRN 5FLXd 5IT9d 2UXDN 4AQYN 4JI7N 4JI6N 4B3RN 4DV4N 4LFBN 4DR4N 4DV0N 3J81d 1HNXN 4B3TN 4JYAN 2VQFN 4DR5N 3T1YN 5LMUN 1HR0N 4JI1N 4JI0N 1N33N 2UU9N 3T1HN 4NXMN 4DV7N 4DR7N 4DUYN 4DV5N 4NXNN 4JI2N 4GKJN 4GKKN 1XMQN 3JAMd 4JI3N 1HNZN 1I94N 4K0KN 2UUCN 2HHHN 4YY3N 2UUAN 4DR3N 5IWAN 1FJGN 4LFAN 4X66N 4DR2N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DV3 N;  4DV2 N;  4LF6 N;  4B3S N;  4B3M N;  4JI4 N;  5LMN N;  5BR8 N;  1XNQ N;  4X64 N;  4LF7 N;  4DV6 N;  5A2Q d;  4DR1 N;  1XMO N;  4X65 N;  2VQE N;  4DR6 N;  4KHP N;  4LFC N;  4JI5 N;  4LF4 N;  4X62 N;  1IBL N;  4LF9 N;  1HNW N;  2F4V N;  1N32 N;  2ZM6 N;  1N34 N;  3J80 d;  1N36 N;  1IBM N;  3OTO N;  2UXB N;  1IBK N;  2UXC N;  4OX9 N;  4LF8 N;  4DUZ N;  4LF5 N;  4YHH N;  4JV5 N;  2E5L N;  3J7A T;  4JI8 N;  4DV1 N;  2UUB N;  1J5E N;  1XNR N;  5FLX d;  5IT9 d;  2UXD N;  4AQY N;  4JI7 N;  4JI6 N;  4B3R N;  4DV4 N;  4LFB N;  4DR4 N;  4DV0 N;  3J81 d;  1HNX N;  4B3T N;  4JYA N;  2VQF N;  4DR5 N;  3T1Y N;  5LMU N;  1HR0 N;  4JI1 N;  4JI0 N;  1N33 N;  2UU9 N;  3T1H N;  4NXM N;  4DV7 N;  4DR7 N;  4DUY N;  4DV5 N;  4NXN N;  4JI2 N;  4GKJ N;  4GKK N;  1XMQ N;  3JAM d;  4JI3 N;  1HNZ N;  1I94 N;  4K0K N;  2UUC N;  2HHH N;  4YY3 N;  2UUA N;  4DR3 N;  5IWA N;  1FJG N;  4LFA N;  4X66 N;  4DR2 N; 
#chains in the Genus database with same CATH topology
 4DV3 N;  4DV2 N;  4LF6 N;  4B3S N;  4B3M N;  4JI4 N;  5LMN N;  5BR8 N;  1XNQ N;  4X64 N;  4LF7 N;  4DV6 N;  5A2Q d;  4DR1 N;  1XMO N;  4X65 N;  2VQE N;  4DR6 N;  4KHP N;  4LFC N;  4JI5 N;  4LF4 N;  4X62 N;  1IBL N;  4LF9 N;  1HNW N;  2F4V N;  1N32 N;  2ZM6 N;  1N34 N;  3J80 d;  1N36 N;  1IBM N;  3OTO N;  2UXB N;  1IBK N;  2UXC N;  4OX9 N;  4LF8 N;  4DUZ N;  4LF5 N;  4YHH N;  4JV5 N;  2E5L N;  3J7A T;  4JI8 N;  4DV1 N;  2UUB N;  1J5E N;  1XNR N;  5FLX d;  5IT9 d;  2UXD N;  4AQY N;  4JI7 N;  4JI6 N;  4B3R N;  4DV4 N;  4LFB N;  4DR4 N;  4DV0 N;  3J81 d;  1HNX N;  4B3T N;  4JYA N;  2VQF N;  4DR5 N;  3T1Y N;  5LMU N;  1HR0 N;  4JI1 N;  4JI0 N;  1N33 N;  2UU9 N;  3T1H N;  4NXM N;  4DV7 N;  4DR7 N;  4DUY N;  4DV5 N;  4NXN N;  4JI2 N;  4GKJ N;  4GKK N;  1XMQ N;  3JAM d;  4JI3 N;  1HNZ N;  1I94 N;  4K0K N;  2UUC N;  2HHH N;  4YY3 N;  2UUA N;  4DR3 N;  5IWA N;  1FJG N;  4LFA N;  4X66 N;  4DR2 N; 
#chains in the Genus database with same CATH homology
 4DV3 N;  4DV2 N;  4LF6 N;  4B3S N;  4B3M N;  4JI4 N;  5LMN N;  5BR8 N;  1XNQ N;  4X64 N;  4LF7 N;  4DV6 N;  5A2Q d;  4DR1 N;  1XMO N;  4X65 N;  2VQE N;  4DR6 N;  4KHP N;  4LFC N;  4JI5 N;  4LF4 N;  4X62 N;  1IBL N;  4LF9 N;  1HNW N;  2F4V N;  1N32 N;  2ZM6 N;  1N34 N;  3J80 d;  1N36 N;  1IBM N;  3OTO N;  2UXB N;  1IBK N;  2UXC N;  4OX9 N;  4LF8 N;  4DUZ N;  4LF5 N;  4YHH N;  4JV5 N;  2E5L N;  3J7A T;  4JI8 N;  4DV1 N;  2UUB N;  1J5E N;  1XNR N;  5FLX d;  5IT9 d;  2UXD N;  4AQY N;  4JI7 N;  4JI6 N;  4B3R N;  4DV4 N;  4LFB N;  4DR4 N;  4DV0 N;  3J81 d;  1HNX N;  4B3T N;  4JYA N;  2VQF N;  4DR5 N;  3T1Y N;  5LMU N;  1HR0 N;  4JI1 N;  4JI0 N;  1N33 N;  2UU9 N;  3T1H N;  4NXM N;  4DV7 N;  4DR7 N;  4DUY N;  4DV5 N;  4NXN N;  4JI2 N;  4GKJ N;  4GKK N;  1XMQ N;  3JAM d;  4JI3 N;  1HNZ N;  1I94 N;  4K0K N;  2UUC N;  2HHH N;  4YY3 N;  2UUA N;  4DR3 N;  5IWA N;  1FJG N;  4LFA N;  4X66 N;  4DR2 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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