4JI0N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2013-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ji0N00
5IT9d 3T1HN 1IBLN 4JI3N 4GKKN 4LF4N 1XNQN 4LF5N 3J80d 4JI4N 1HNZN 4X64N 4B3RN 4DR6N 4LFCN 4JI7N 4X62N 4DUYN 1N36N 3T1YN 4DV7N 4DR4N 4NXMN 2E5LN 5LMUN 2UUAN 4JI5N 4LF7N 4JV5N 4DR2N 1I94N 4B3TN 4YHHN 4DV6N 4JYAN 2HHHN 5IWAN 1IBKN 2UXDN 4JI0N 1N34N 2ZM6N 5LMNN 1N33N 1XMQN 4DV0N 4LF9N 4LF6N 5FLXd 1XMON 4JI8N 4NXNN 4DV2N 5A2Qd 4JI2N 4LF8N 1HNXN 3J81d 4DV4N 4JI1N 4DR5N 2UUBN 2UXBN 4K0KN 4KHPN 4X66N 2VQFN 4DUZN 3J7AT 1N32N 4LFAN 4LFBN 4B3MN 2UXCN 2VQEN 3JAMd 1J5EN 4GKJN 4DV5N 4DR1N 2F4VN 5BR8N 2UUCN 1HR0N 1HNWN 4DV1N 2UU9N 4DR7N 3OTON 4JI6N 4YY3N 4X65N 4AQYN 1FJGN 4DV3N 4B3SN 4DR3N 1IBMN 1XNRN 4OX9N
chains in the Genus database with same CATH superfamily
5IT9d 3T1HN 1IBLN 4JI3N 4GKKN 4LF4N 1XNQN 4LF5N 3J80d 4JI4N 1HNZN 4X64N 4B3RN 4DR6N 4LFCN 4JI7N 4X62N 4DUYN 1N36N 3T1YN 4DV7N 4DR4N 4NXMN 2E5LN 5LMUN 2UUAN 4JI5N 4LF7N 4JV5N 4DR2N 1I94N 4B3TN 4YHHN 4DV6N 4JYAN 2HHHN 5IWAN 1IBKN 2UXDN 4JI0N 1N34N 2ZM6N 5LMNN 1N33N 1XMQN 4DV0N 4LF9N 4LF6N 5FLXd 1XMON 4JI8N 4NXNN 4DV2N 5A2Qd 4JI2N 4LF8N 1HNXN 3J81d 4DV4N 4JI1N 4DR5N 2UUBN 2UXBN 4K0KN 4KHPN 4X66N 2VQFN 4DUZN 3J7AT 1N32N 4LFAN 4LFBN 4B3MN 2UXCN 2VQEN 3JAMd 1J5EN 4GKJN 4DV5N 4DR1N 2F4VN 5BR8N 2UUCN 1HR0N 1HNWN 4DV1N 2UU9N 4DR7N 3OTON 4JI6N 4YY3N 4X65N 4AQYN 1FJGN 4DV3N 4B3SN 4DR3N 1IBMN 1XNRN 4OX9N
chains in the Genus database with same CATH topology
5IT9d 3T1HN 1IBLN 4JI3N 4GKKN 4LF4N 1XNQN 4LF5N 3J80d 4JI4N 1HNZN 4X64N 4B3RN 4DR6N 4LFCN 4JI7N 4X62N 4DUYN 1N36N 3T1YN 4DV7N 4DR4N 4NXMN 2E5LN 5LMUN 2UUAN 4JI5N 4LF7N 4JV5N 4DR2N 1I94N 4B3TN 4YHHN 4DV6N 4JYAN 2HHHN 5IWAN 1IBKN 2UXDN 4JI0N 1N34N 2ZM6N 5LMNN 1N33N 1XMQN 4DV0N 4LF9N 4LF6N 5FLXd 1XMON 4JI8N 4NXNN 4DV2N 5A2Qd 4JI2N 4LF8N 1HNXN 3J81d 4DV4N 4JI1N 4DR5N 2UUBN 2UXBN 4K0KN 4KHPN 4X66N 2VQFN 4DUZN 3J7AT 1N32N 4LFAN 4LFBN 4B3MN 2UXCN 2VQEN 3JAMd 1J5EN 4GKJN 4DV5N 4DR1N 2F4VN 5BR8N 2UUCN 1HR0N 1HNWN 4DV1N 2UU9N 4DR7N 3OTON 4JI6N 4YY3N 4X65N 4AQYN 1FJGN 4DV3N 4B3SN 4DR3N 1IBMN 1XNRN 4OX9N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IT9 d;  3T1H N;  1IBL N;  4JI3 N;  4GKK N;  4LF4 N;  1XNQ N;  4LF5 N;  3J80 d;  4JI4 N;  1HNZ N;  4X64 N;  4B3R N;  4DR6 N;  4LFC N;  4JI7 N;  4X62 N;  4DUY N;  1N36 N;  3T1Y N;  4DV7 N;  4DR4 N;  4NXM N;  2E5L N;  5LMU N;  2UUA N;  4JI5 N;  4LF7 N;  4JV5 N;  4DR2 N;  1I94 N;  4B3T N;  4YHH N;  4DV6 N;  4JYA N;  2HHH N;  5IWA N;  1IBK N;  2UXD N;  4JI0 N;  1N34 N;  2ZM6 N;  5LMN N;  1N33 N;  1XMQ N;  4DV0 N;  4LF9 N;  4LF6 N;  5FLX d;  1XMO N;  4JI8 N;  4NXN N;  4DV2 N;  5A2Q d;  4JI2 N;  4LF8 N;  1HNX N;  3J81 d;  4DV4 N;  4JI1 N;  4DR5 N;  2UUB N;  2UXB N;  4K0K N;  4KHP N;  4X66 N;  2VQF N;  4DUZ N;  3J7A T;  1N32 N;  4LFA N;  4LFB N;  4B3M N;  2UXC N;  2VQE N;  3JAM d;  1J5E N;  4GKJ N;  4DV5 N;  4DR1 N;  2F4V N;  5BR8 N;  2UUC N;  1HR0 N;  1HNW N;  4DV1 N;  2UU9 N;  4DR7 N;  3OTO N;  4JI6 N;  4YY3 N;  4X65 N;  4AQY N;  1FJG N;  4DV3 N;  4B3S N;  4DR3 N;  1IBM N;  1XNR N;  4OX9 N; 
#chains in the Genus database with same CATH topology
 5IT9 d;  3T1H N;  1IBL N;  4JI3 N;  4GKK N;  4LF4 N;  1XNQ N;  4LF5 N;  3J80 d;  4JI4 N;  1HNZ N;  4X64 N;  4B3R N;  4DR6 N;  4LFC N;  4JI7 N;  4X62 N;  4DUY N;  1N36 N;  3T1Y N;  4DV7 N;  4DR4 N;  4NXM N;  2E5L N;  5LMU N;  2UUA N;  4JI5 N;  4LF7 N;  4JV5 N;  4DR2 N;  1I94 N;  4B3T N;  4YHH N;  4DV6 N;  4JYA N;  2HHH N;  5IWA N;  1IBK N;  2UXD N;  4JI0 N;  1N34 N;  2ZM6 N;  5LMN N;  1N33 N;  1XMQ N;  4DV0 N;  4LF9 N;  4LF6 N;  5FLX d;  1XMO N;  4JI8 N;  4NXN N;  4DV2 N;  5A2Q d;  4JI2 N;  4LF8 N;  1HNX N;  3J81 d;  4DV4 N;  4JI1 N;  4DR5 N;  2UUB N;  2UXB N;  4K0K N;  4KHP N;  4X66 N;  2VQF N;  4DUZ N;  3J7A T;  1N32 N;  4LFA N;  4LFB N;  4B3M N;  2UXC N;  2VQE N;  3JAM d;  1J5E N;  4GKJ N;  4DV5 N;  4DR1 N;  2F4V N;  5BR8 N;  2UUC N;  1HR0 N;  1HNW N;  4DV1 N;  2UU9 N;  4DR7 N;  3OTO N;  4JI6 N;  4YY3 N;  4X65 N;  4AQY N;  1FJG N;  4DV3 N;  4B3S N;  4DR3 N;  1IBM N;  1XNR N;  4OX9 N; 
#chains in the Genus database with same CATH homology
 5IT9 d;  3T1H N;  1IBL N;  4JI3 N;  4GKK N;  4LF4 N;  1XNQ N;  4LF5 N;  3J80 d;  4JI4 N;  1HNZ N;  4X64 N;  4B3R N;  4DR6 N;  4LFC N;  4JI7 N;  4X62 N;  4DUY N;  1N36 N;  3T1Y N;  4DV7 N;  4DR4 N;  4NXM N;  2E5L N;  5LMU N;  2UUA N;  4JI5 N;  4LF7 N;  4JV5 N;  4DR2 N;  1I94 N;  4B3T N;  4YHH N;  4DV6 N;  4JYA N;  2HHH N;  5IWA N;  1IBK N;  2UXD N;  4JI0 N;  1N34 N;  2ZM6 N;  5LMN N;  1N33 N;  1XMQ N;  4DV0 N;  4LF9 N;  4LF6 N;  5FLX d;  1XMO N;  4JI8 N;  4NXN N;  4DV2 N;  5A2Q d;  4JI2 N;  4LF8 N;  1HNX N;  3J81 d;  4DV4 N;  4JI1 N;  4DR5 N;  2UUB N;  2UXB N;  4K0K N;  4KHP N;  4X66 N;  2VQF N;  4DUZ N;  3J7A T;  1N32 N;  4LFA N;  4LFB N;  4B3M N;  2UXC N;  2VQE N;  3JAM d;  1J5E N;  4GKJ N;  4DV5 N;  4DR1 N;  2F4V N;  5BR8 N;  2UUC N;  1HR0 N;  1HNW N;  4DV1 N;  2UU9 N;  4DR7 N;  3OTO N;  4JI6 N;  4YY3 N;  4X65 N;  4AQY N;  1FJG N;  4DV3 N;  4B3S N;  4DR3 N;  1IBM N;  1XNR N;  4OX9 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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