4LF5N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2013-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4lf5N00
4LF7N 2VQEN 5IT9d 2HHHN 4YY3N 4DV6N 2ZM6N 1N36N 4DUZN 4X65N 1HNWN 4JYAN 4X62N 2UU9N 4B3TN 3J81d 4DV2N 1HR0N 1FJGN 2F4VN 2E5LN 4B3MN 4JI2N 5LMNN 1I94N 4JI4N 4JI0N 4DUYN 4JI1N 1N33N 1IBLN 5A2Qd 4LF8N 4DR4N 4GKKN 4OX9N 4DR3N 4DV7N 4DV5N 4X64N 4LFBN 3JAMd 2VQFN 1XNRN 4AQYN 1HNZN 4LF4N 1HNXN 4JV5N 4JI3N 4JI5N 3J7AT 4LF9N 4DV1N 1XMQN 4B3SN 5FLXd 1XMON 4DR2N 5LMUN 5IWAN 4K0KN 4DR1N 2UUBN 4DV0N 3T1HN 4KHPN 4JI7N 3OTON 4LF6N 4LFCN 5BR8N 2UUCN 1N32N 3J80d 4DV3N 4JI6N 2UXCN 1J5EN 4X66N 4NXMN 4DR7N 1IBKN 4JI8N 2UXDN 3T1YN 4DV4N 4GKJN 1IBMN 1XNQN 2UXBN 4YHHN 4LFAN 4DR6N 2UUAN 1N34N 4NXNN 4LF5N 4DR5N 4B3RN
chains in the Genus database with same CATH superfamily
4LF7N 2VQEN 5IT9d 2HHHN 4YY3N 4DV6N 2ZM6N 1N36N 4DUZN 4X65N 1HNWN 4JYAN 4X62N 2UU9N 4B3TN 3J81d 4DV2N 1HR0N 1FJGN 2F4VN 2E5LN 4B3MN 4JI2N 5LMNN 1I94N 4JI4N 4JI0N 4DUYN 4JI1N 1N33N 1IBLN 5A2Qd 4LF8N 4DR4N 4GKKN 4OX9N 4DR3N 4DV7N 4DV5N 4X64N 4LFBN 3JAMd 2VQFN 1XNRN 4AQYN 1HNZN 4LF4N 1HNXN 4JV5N 4JI3N 4JI5N 3J7AT 4LF9N 4DV1N 1XMQN 4B3SN 5FLXd 1XMON 4DR2N 5LMUN 5IWAN 4K0KN 4DR1N 2UUBN 4DV0N 3T1HN 4KHPN 4JI7N 3OTON 4LF6N 4LFCN 5BR8N 2UUCN 1N32N 3J80d 4DV3N 4JI6N 2UXCN 1J5EN 4X66N 4NXMN 4DR7N 1IBKN 4JI8N 2UXDN 3T1YN 4DV4N 4GKJN 1IBMN 1XNQN 2UXBN 4YHHN 4LFAN 4DR6N 2UUAN 1N34N 4NXNN 4LF5N 4DR5N 4B3RN
chains in the Genus database with same CATH topology
4LF7N 2VQEN 5IT9d 2HHHN 4YY3N 4DV6N 2ZM6N 1N36N 4DUZN 4X65N 1HNWN 4JYAN 4X62N 2UU9N 4B3TN 3J81d 4DV2N 1HR0N 1FJGN 2F4VN 2E5LN 4B3MN 4JI2N 5LMNN 1I94N 4JI4N 4JI0N 4DUYN 4JI1N 1N33N 1IBLN 5A2Qd 4LF8N 4DR4N 4GKKN 4OX9N 4DR3N 4DV7N 4DV5N 4X64N 4LFBN 3JAMd 2VQFN 1XNRN 4AQYN 1HNZN 4LF4N 1HNXN 4JV5N 4JI3N 4JI5N 3J7AT 4LF9N 4DV1N 1XMQN 4B3SN 5FLXd 1XMON 4DR2N 5LMUN 5IWAN 4K0KN 4DR1N 2UUBN 4DV0N 3T1HN 4KHPN 4JI7N 3OTON 4LF6N 4LFCN 5BR8N 2UUCN 1N32N 3J80d 4DV3N 4JI6N 2UXCN 1J5EN 4X66N 4NXMN 4DR7N 1IBKN 4JI8N 2UXDN 3T1YN 4DV4N 4GKJN 1IBMN 1XNQN 2UXBN 4YHHN 4LFAN 4DR6N 2UUAN 1N34N 4NXNN 4LF5N 4DR5N 4B3RN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LF7 N;  2VQE N;  5IT9 d;  2HHH N;  4YY3 N;  4DV6 N;  2ZM6 N;  1N36 N;  4DUZ N;  4X65 N;  1HNW N;  4JYA N;  4X62 N;  2UU9 N;  4B3T N;  3J81 d;  4DV2 N;  1HR0 N;  1FJG N;  2F4V N;  2E5L N;  4B3M N;  4JI2 N;  5LMN N;  1I94 N;  4JI4 N;  4JI0 N;  4DUY N;  4JI1 N;  1N33 N;  1IBL N;  5A2Q d;  4LF8 N;  4DR4 N;  4GKK N;  4OX9 N;  4DR3 N;  4DV7 N;  4DV5 N;  4X64 N;  4LFB N;  3JAM d;  2VQF N;  1XNR N;  4AQY N;  1HNZ N;  4LF4 N;  1HNX N;  4JV5 N;  4JI3 N;  4JI5 N;  3J7A T;  4LF9 N;  4DV1 N;  1XMQ N;  4B3S N;  5FLX d;  1XMO N;  4DR2 N;  5LMU N;  5IWA N;  4K0K N;  4DR1 N;  2UUB N;  4DV0 N;  3T1H N;  4KHP N;  4JI7 N;  3OTO N;  4LF6 N;  4LFC N;  5BR8 N;  2UUC N;  1N32 N;  3J80 d;  4DV3 N;  4JI6 N;  2UXC N;  1J5E N;  4X66 N;  4NXM N;  4DR7 N;  1IBK N;  4JI8 N;  2UXD N;  3T1Y N;  4DV4 N;  4GKJ N;  1IBM N;  1XNQ N;  2UXB N;  4YHH N;  4LFA N;  4DR6 N;  2UUA N;  1N34 N;  4NXN N;  4LF5 N;  4DR5 N;  4B3R N; 
#chains in the Genus database with same CATH topology
 4LF7 N;  2VQE N;  5IT9 d;  2HHH N;  4YY3 N;  4DV6 N;  2ZM6 N;  1N36 N;  4DUZ N;  4X65 N;  1HNW N;  4JYA N;  4X62 N;  2UU9 N;  4B3T N;  3J81 d;  4DV2 N;  1HR0 N;  1FJG N;  2F4V N;  2E5L N;  4B3M N;  4JI2 N;  5LMN N;  1I94 N;  4JI4 N;  4JI0 N;  4DUY N;  4JI1 N;  1N33 N;  1IBL N;  5A2Q d;  4LF8 N;  4DR4 N;  4GKK N;  4OX9 N;  4DR3 N;  4DV7 N;  4DV5 N;  4X64 N;  4LFB N;  3JAM d;  2VQF N;  1XNR N;  4AQY N;  1HNZ N;  4LF4 N;  1HNX N;  4JV5 N;  4JI3 N;  4JI5 N;  3J7A T;  4LF9 N;  4DV1 N;  1XMQ N;  4B3S N;  5FLX d;  1XMO N;  4DR2 N;  5LMU N;  5IWA N;  4K0K N;  4DR1 N;  2UUB N;  4DV0 N;  3T1H N;  4KHP N;  4JI7 N;  3OTO N;  4LF6 N;  4LFC N;  5BR8 N;  2UUC N;  1N32 N;  3J80 d;  4DV3 N;  4JI6 N;  2UXC N;  1J5E N;  4X66 N;  4NXM N;  4DR7 N;  1IBK N;  4JI8 N;  2UXD N;  3T1Y N;  4DV4 N;  4GKJ N;  1IBM N;  1XNQ N;  2UXB N;  4YHH N;  4LFA N;  4DR6 N;  2UUA N;  1N34 N;  4NXN N;  4LF5 N;  4DR5 N;  4B3R N; 
#chains in the Genus database with same CATH homology
 4LF7 N;  2VQE N;  5IT9 d;  2HHH N;  4YY3 N;  4DV6 N;  2ZM6 N;  1N36 N;  4DUZ N;  4X65 N;  1HNW N;  4JYA N;  4X62 N;  2UU9 N;  4B3T N;  3J81 d;  4DV2 N;  1HR0 N;  1FJG N;  2F4V N;  2E5L N;  4B3M N;  4JI2 N;  5LMN N;  1I94 N;  4JI4 N;  4JI0 N;  4DUY N;  4JI1 N;  1N33 N;  1IBL N;  5A2Q d;  4LF8 N;  4DR4 N;  4GKK N;  4OX9 N;  4DR3 N;  4DV7 N;  4DV5 N;  4X64 N;  4LFB N;  3JAM d;  2VQF N;  1XNR N;  4AQY N;  1HNZ N;  4LF4 N;  1HNX N;  4JV5 N;  4JI3 N;  4JI5 N;  3J7A T;  4LF9 N;  4DV1 N;  1XMQ N;  4B3S N;  5FLX d;  1XMO N;  4DR2 N;  5LMU N;  5IWA N;  4K0K N;  4DR1 N;  2UUB N;  4DV0 N;  3T1H N;  4KHP N;  4JI7 N;  3OTO N;  4LF6 N;  4LFC N;  5BR8 N;  2UUC N;  1N32 N;  3J80 d;  4DV3 N;  4JI6 N;  2UXC N;  1J5E N;  4X66 N;  4NXM N;  4DR7 N;  1IBK N;  4JI8 N;  2UXD N;  3T1Y N;  4DV4 N;  4GKJ N;  1IBM N;  1XNQ N;  2UXB N;  4YHH N;  4LFA N;  4DR6 N;  2UUA N;  1N34 N;  4NXN N;  4LF5 N;  4DR5 N;  4B3R N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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