3T1HN

Structure of the thermus thermophilus 30s ribosomal subunit complexed with a human anti-codon stem loop (hasl) of transfer rna lysine 3 (trnalys3) bound to an mrna with an aaa-codon in the a-site and paromomycin
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16s rRNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2011-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 3t1hN00
2UUAN 4X64N 4DR3N 1HNXN 1N33N 5IT9d 4DV0N 4JI6N 4DR2N 4DR7N 2F4VN 2UUBN 1IBKN 4JI4N 1HNWN 1I94N 1XNQN 4JI0N 1XNRN 4LF6N 4DUZN 1IBMN 3T1YN 1N34N 4KHPN 5BR8N 1XMQN 4LF7N 2UXDN 3J7AT 3J81d 2E5LN 3J80d 5LMNN 1IBLN 4NXNN 4K0KN 2UUCN 4DR4N 5IWAN 4GKKN 4GKJN 2ZM6N 5A2Qd 4AQYN 2HHHN 1J5EN 4YHHN 1HNZN 1HR0N 4B3MN 4DV6N 3OTON 1N36N 4JI3N 5FLXd 4DR1N 4X65N 4DV7N 4B3TN 1N32N 4LF8N 2UXCN 4B3RN 2VQEN 4LFBN 4B3SN 3T1HN 4JI1N 4DR5N 2UU9N 4YY3N 4X66N 5LMUN 4DUYN 4LFCN 4DR6N 4LF5N 4JI2N 4DV2N 4X62N 4JI8N 3JAMd 4DV4N 4JV5N 4JI5N 4DV3N 4LF4N 4LF9N 2VQFN 4JI7N 1FJGN 2UXBN 4LFAN 4DV5N 4OX9N 4DV1N 1XMON 4JYAN 4NXMN
chains in the Genus database with same CATH superfamily
2UUAN 4X64N 4DR3N 1HNXN 1N33N 5IT9d 4DV0N 4JI6N 4DR2N 4DR7N 2F4VN 2UUBN 1IBKN 4JI4N 1HNWN 1I94N 1XNQN 4JI0N 1XNRN 4LF6N 4DUZN 1IBMN 3T1YN 1N34N 4KHPN 5BR8N 1XMQN 4LF7N 2UXDN 3J7AT 3J81d 2E5LN 3J80d 5LMNN 1IBLN 4NXNN 4K0KN 2UUCN 4DR4N 5IWAN 4GKKN 4GKJN 2ZM6N 5A2Qd 4AQYN 2HHHN 1J5EN 4YHHN 1HNZN 1HR0N 4B3MN 4DV6N 3OTON 1N36N 4JI3N 5FLXd 4DR1N 4X65N 4DV7N 4B3TN 1N32N 4LF8N 2UXCN 4B3RN 2VQEN 4LFBN 4B3SN 3T1HN 4JI1N 4DR5N 2UU9N 4YY3N 4X66N 5LMUN 4DUYN 4LFCN 4DR6N 4LF5N 4JI2N 4DV2N 4X62N 4JI8N 3JAMd 4DV4N 4JV5N 4JI5N 4DV3N 4LF4N 4LF9N 2VQFN 4JI7N 1FJGN 2UXBN 4LFAN 4DV5N 4OX9N 4DV1N 1XMON 4JYAN 4NXMN
chains in the Genus database with same CATH topology
2UUAN 4X64N 4DR3N 1HNXN 1N33N 5IT9d 4DV0N 4JI6N 4DR2N 4DR7N 2F4VN 2UUBN 1IBKN 4JI4N 1HNWN 1I94N 1XNQN 4JI0N 1XNRN 4LF6N 4DUZN 1IBMN 3T1YN 1N34N 4KHPN 5BR8N 1XMQN 4LF7N 2UXDN 3J7AT 3J81d 2E5LN 3J80d 5LMNN 1IBLN 4NXNN 4K0KN 2UUCN 4DR4N 5IWAN 4GKKN 4GKJN 2ZM6N 5A2Qd 4AQYN 2HHHN 1J5EN 4YHHN 1HNZN 1HR0N 4B3MN 4DV6N 3OTON 1N36N 4JI3N 5FLXd 4DR1N 4X65N 4DV7N 4B3TN 1N32N 4LF8N 2UXCN 4B3RN 2VQEN 4LFBN 4B3SN 3T1HN 4JI1N 4DR5N 2UU9N 4YY3N 4X66N 5LMUN 4DUYN 4LFCN 4DR6N 4LF5N 4JI2N 4DV2N 4X62N 4JI8N 3JAMd 4DV4N 4JV5N 4JI5N 4DV3N 4LF4N 4LF9N 2VQFN 4JI7N 1FJGN 2UXBN 4LFAN 4DV5N 4OX9N 4DV1N 1XMON 4JYAN 4NXMN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UUA N;  4X64 N;  4DR3 N;  1HNX N;  1N33 N;  5IT9 d;  4DV0 N;  4JI6 N;  4DR2 N;  4DR7 N;  2F4V N;  2UUB N;  1IBK N;  4JI4 N;  1HNW N;  1I94 N;  1XNQ N;  4JI0 N;  1XNR N;  4LF6 N;  4DUZ N;  1IBM N;  3T1Y N;  1N34 N;  4KHP N;  5BR8 N;  1XMQ N;  4LF7 N;  2UXD N;  3J7A T;  3J81 d;  2E5L N;  3J80 d;  5LMN N;  1IBL N;  4NXN N;  4K0K N;  2UUC N;  4DR4 N;  5IWA N;  4GKK N;  4GKJ N;  2ZM6 N;  5A2Q d;  4AQY N;  2HHH N;  1J5E N;  4YHH N;  1HNZ N;  1HR0 N;  4B3M N;  4DV6 N;  3OTO N;  1N36 N;  4JI3 N;  5FLX d;  4DR1 N;  4X65 N;  4DV7 N;  4B3T N;  1N32 N;  4LF8 N;  2UXC N;  4B3R N;  2VQE N;  4LFB N;  4B3S N;  3T1H N;  4JI1 N;  4DR5 N;  2UU9 N;  4YY3 N;  4X66 N;  5LMU N;  4DUY N;  4LFC N;  4DR6 N;  4LF5 N;  4JI2 N;  4DV2 N;  4X62 N;  4JI8 N;  3JAM d;  4DV4 N;  4JV5 N;  4JI5 N;  4DV3 N;  4LF4 N;  4LF9 N;  2VQF N;  4JI7 N;  1FJG N;  2UXB N;  4LFA N;  4DV5 N;  4OX9 N;  4DV1 N;  1XMO N;  4JYA N;  4NXM N; 
#chains in the Genus database with same CATH topology
 2UUA N;  4X64 N;  4DR3 N;  1HNX N;  1N33 N;  5IT9 d;  4DV0 N;  4JI6 N;  4DR2 N;  4DR7 N;  2F4V N;  2UUB N;  1IBK N;  4JI4 N;  1HNW N;  1I94 N;  1XNQ N;  4JI0 N;  1XNR N;  4LF6 N;  4DUZ N;  1IBM N;  3T1Y N;  1N34 N;  4KHP N;  5BR8 N;  1XMQ N;  4LF7 N;  2UXD N;  3J7A T;  3J81 d;  2E5L N;  3J80 d;  5LMN N;  1IBL N;  4NXN N;  4K0K N;  2UUC N;  4DR4 N;  5IWA N;  4GKK N;  4GKJ N;  2ZM6 N;  5A2Q d;  4AQY N;  2HHH N;  1J5E N;  4YHH N;  1HNZ N;  1HR0 N;  4B3M N;  4DV6 N;  3OTO N;  1N36 N;  4JI3 N;  5FLX d;  4DR1 N;  4X65 N;  4DV7 N;  4B3T N;  1N32 N;  4LF8 N;  2UXC N;  4B3R N;  2VQE N;  4LFB N;  4B3S N;  3T1H N;  4JI1 N;  4DR5 N;  2UU9 N;  4YY3 N;  4X66 N;  5LMU N;  4DUY N;  4LFC N;  4DR6 N;  4LF5 N;  4JI2 N;  4DV2 N;  4X62 N;  4JI8 N;  3JAM d;  4DV4 N;  4JV5 N;  4JI5 N;  4DV3 N;  4LF4 N;  4LF9 N;  2VQF N;  4JI7 N;  1FJG N;  2UXB N;  4LFA N;  4DV5 N;  4OX9 N;  4DV1 N;  1XMO N;  4JYA N;  4NXM N; 
#chains in the Genus database with same CATH homology
 2UUA N;  4X64 N;  4DR3 N;  1HNX N;  1N33 N;  5IT9 d;  4DV0 N;  4JI6 N;  4DR2 N;  4DR7 N;  2F4V N;  2UUB N;  1IBK N;  4JI4 N;  1HNW N;  1I94 N;  1XNQ N;  4JI0 N;  1XNR N;  4LF6 N;  4DUZ N;  1IBM N;  3T1Y N;  1N34 N;  4KHP N;  5BR8 N;  1XMQ N;  4LF7 N;  2UXD N;  3J7A T;  3J81 d;  2E5L N;  3J80 d;  5LMN N;  1IBL N;  4NXN N;  4K0K N;  2UUC N;  4DR4 N;  5IWA N;  4GKK N;  4GKJ N;  2ZM6 N;  5A2Q d;  4AQY N;  2HHH N;  1J5E N;  4YHH N;  1HNZ N;  1HR0 N;  4B3M N;  4DV6 N;  3OTO N;  1N36 N;  4JI3 N;  5FLX d;  4DR1 N;  4X65 N;  4DV7 N;  4B3T N;  1N32 N;  4LF8 N;  2UXC N;  4B3R N;  2VQE N;  4LFB N;  4B3S N;  3T1H N;  4JI1 N;  4DR5 N;  2UU9 N;  4YY3 N;  4X66 N;  5LMU N;  4DUY N;  4LFC N;  4DR6 N;  4LF5 N;  4JI2 N;  4DV2 N;  4X62 N;  4JI8 N;  3JAM d;  4DV4 N;  4JV5 N;  4JI5 N;  4DV3 N;  4LF4 N;  4LF9 N;  2VQF N;  4JI7 N;  1FJG N;  2UXB N;  4LFA N;  4DV5 N;  4OX9 N;  4DV1 N;  1XMO N;  4JYA N;  4NXM N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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