4X64N

Crystal structure of 30s ribosomal subunit from thermus thermophilus
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title N(6)-methyladenosine in mRNA disrupts tRNA selection and translation-elongation dynamics.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2014-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4x64N00
4X62N 4X65N 4DUYN 4DR2N 4JI0N 4JI8N 5A2Qd 4B3RN 2VQEN 5LMNN 4B3SN 4DR1N 4LF8N 1N33N 2UU9N 4LF4N 1XMQN 4LF5N 2UXDN 2VQFN 4DV1N 1HR0N 1HNXN 1XNRN 2ZM6N 4NXNN 1FJGN 4GKJN 4DV0N 1XNQN 2UXBN 2HHHN 4JI1N 4DV5N 1J5EN 4LFCN 4JI6N 3OTON 4LF7N 4B3TN 4DR3N 4DV3N 4DV6N 3J80d 4YY3N 4AQYN 4JI3N 4JYAN 5IWAN 5IT9d 1N34N 4LFAN 2UUCN 4DV4N 1HNZN 2UUAN 4YHHN 4GKKN 2UXCN 4DV2N 4DR5N 4DV7N 4DUZN 4DR6N 3JAMd 1IBKN 3J81d 4B3MN 4JI2N 4DR7N 4LFBN 2E5LN 4X64N 4JV5N 4JI7N 4LF6N 2F4VN 1N32N 4K0KN 4JI4N 3T1YN 5LMUN 4OX9N 3J7AT 4KHPN 1HNWN 5FLXd 4LF9N 4DR4N 3T1HN 1XMON 1N36N 1I94N 1IBMN 5BR8N 1IBLN 4JI5N 2UUBN 4NXMN 4X66N
chains in the Genus database with same CATH superfamily
4X62N 4X65N 4DUYN 4DR2N 4JI0N 4JI8N 5A2Qd 4B3RN 2VQEN 5LMNN 4B3SN 4DR1N 4LF8N 1N33N 2UU9N 4LF4N 1XMQN 4LF5N 2UXDN 2VQFN 4DV1N 1HR0N 1HNXN 1XNRN 2ZM6N 4NXNN 1FJGN 4GKJN 4DV0N 1XNQN 2UXBN 2HHHN 4JI1N 4DV5N 1J5EN 4LFCN 4JI6N 3OTON 4LF7N 4B3TN 4DR3N 4DV3N 4DV6N 3J80d 4YY3N 4AQYN 4JI3N 4JYAN 5IWAN 5IT9d 1N34N 4LFAN 2UUCN 4DV4N 1HNZN 2UUAN 4YHHN 4GKKN 2UXCN 4DV2N 4DR5N 4DV7N 4DUZN 4DR6N 3JAMd 1IBKN 3J81d 4B3MN 4JI2N 4DR7N 4LFBN 2E5LN 4X64N 4JV5N 4JI7N 4LF6N 2F4VN 1N32N 4K0KN 4JI4N 3T1YN 5LMUN 4OX9N 3J7AT 4KHPN 1HNWN 5FLXd 4LF9N 4DR4N 3T1HN 1XMON 1N36N 1I94N 1IBMN 5BR8N 1IBLN 4JI5N 2UUBN 4NXMN 4X66N
chains in the Genus database with same CATH topology
4X62N 4X65N 4DUYN 4DR2N 4JI0N 4JI8N 5A2Qd 4B3RN 2VQEN 5LMNN 4B3SN 4DR1N 4LF8N 1N33N 2UU9N 4LF4N 1XMQN 4LF5N 2UXDN 2VQFN 4DV1N 1HR0N 1HNXN 1XNRN 2ZM6N 4NXNN 1FJGN 4GKJN 4DV0N 1XNQN 2UXBN 2HHHN 4JI1N 4DV5N 1J5EN 4LFCN 4JI6N 3OTON 4LF7N 4B3TN 4DR3N 4DV3N 4DV6N 3J80d 4YY3N 4AQYN 4JI3N 4JYAN 5IWAN 5IT9d 1N34N 4LFAN 2UUCN 4DV4N 1HNZN 2UUAN 4YHHN 4GKKN 2UXCN 4DV2N 4DR5N 4DV7N 4DUZN 4DR6N 3JAMd 1IBKN 3J81d 4B3MN 4JI2N 4DR7N 4LFBN 2E5LN 4X64N 4JV5N 4JI7N 4LF6N 2F4VN 1N32N 4K0KN 4JI4N 3T1YN 5LMUN 4OX9N 3J7AT 4KHPN 1HNWN 5FLXd 4LF9N 4DR4N 3T1HN 1XMON 1N36N 1I94N 1IBMN 5BR8N 1IBLN 4JI5N 2UUBN 4NXMN 4X66N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X62 N;  4X65 N;  4DUY N;  4DR2 N;  4JI0 N;  4JI8 N;  5A2Q d;  4B3R N;  2VQE N;  5LMN N;  4B3S N;  4DR1 N;  4LF8 N;  1N33 N;  2UU9 N;  4LF4 N;  1XMQ N;  4LF5 N;  2UXD N;  2VQF N;  4DV1 N;  1HR0 N;  1HNX N;  1XNR N;  2ZM6 N;  4NXN N;  1FJG N;  4GKJ N;  4DV0 N;  1XNQ N;  2UXB N;  2HHH N;  4JI1 N;  4DV5 N;  1J5E N;  4LFC N;  4JI6 N;  3OTO N;  4LF7 N;  4B3T N;  4DR3 N;  4DV3 N;  4DV6 N;  3J80 d;  4YY3 N;  4AQY N;  4JI3 N;  4JYA N;  5IWA N;  5IT9 d;  1N34 N;  4LFA N;  2UUC N;  4DV4 N;  1HNZ N;  2UUA N;  4YHH N;  4GKK N;  2UXC N;  4DV2 N;  4DR5 N;  4DV7 N;  4DUZ N;  4DR6 N;  3JAM d;  1IBK N;  3J81 d;  4B3M N;  4JI2 N;  4DR7 N;  4LFB N;  2E5L N;  4X64 N;  4JV5 N;  4JI7 N;  4LF6 N;  2F4V N;  1N32 N;  4K0K N;  4JI4 N;  3T1Y N;  5LMU N;  4OX9 N;  3J7A T;  4KHP N;  1HNW N;  5FLX d;  4LF9 N;  4DR4 N;  3T1H N;  1XMO N;  1N36 N;  1I94 N;  1IBM N;  5BR8 N;  1IBL N;  4JI5 N;  2UUB N;  4NXM N;  4X66 N; 
#chains in the Genus database with same CATH topology
 4X62 N;  4X65 N;  4DUY N;  4DR2 N;  4JI0 N;  4JI8 N;  5A2Q d;  4B3R N;  2VQE N;  5LMN N;  4B3S N;  4DR1 N;  4LF8 N;  1N33 N;  2UU9 N;  4LF4 N;  1XMQ N;  4LF5 N;  2UXD N;  2VQF N;  4DV1 N;  1HR0 N;  1HNX N;  1XNR N;  2ZM6 N;  4NXN N;  1FJG N;  4GKJ N;  4DV0 N;  1XNQ N;  2UXB N;  2HHH N;  4JI1 N;  4DV5 N;  1J5E N;  4LFC N;  4JI6 N;  3OTO N;  4LF7 N;  4B3T N;  4DR3 N;  4DV3 N;  4DV6 N;  3J80 d;  4YY3 N;  4AQY N;  4JI3 N;  4JYA N;  5IWA N;  5IT9 d;  1N34 N;  4LFA N;  2UUC N;  4DV4 N;  1HNZ N;  2UUA N;  4YHH N;  4GKK N;  2UXC N;  4DV2 N;  4DR5 N;  4DV7 N;  4DUZ N;  4DR6 N;  3JAM d;  1IBK N;  3J81 d;  4B3M N;  4JI2 N;  4DR7 N;  4LFB N;  2E5L N;  4X64 N;  4JV5 N;  4JI7 N;  4LF6 N;  2F4V N;  1N32 N;  4K0K N;  4JI4 N;  3T1Y N;  5LMU N;  4OX9 N;  3J7A T;  4KHP N;  1HNW N;  5FLX d;  4LF9 N;  4DR4 N;  3T1H N;  1XMO N;  1N36 N;  1I94 N;  1IBM N;  5BR8 N;  1IBL N;  4JI5 N;  2UUB N;  4NXM N;  4X66 N; 
#chains in the Genus database with same CATH homology
 4X62 N;  4X65 N;  4DUY N;  4DR2 N;  4JI0 N;  4JI8 N;  5A2Q d;  4B3R N;  2VQE N;  5LMN N;  4B3S N;  4DR1 N;  4LF8 N;  1N33 N;  2UU9 N;  4LF4 N;  1XMQ N;  4LF5 N;  2UXD N;  2VQF N;  4DV1 N;  1HR0 N;  1HNX N;  1XNR N;  2ZM6 N;  4NXN N;  1FJG N;  4GKJ N;  4DV0 N;  1XNQ N;  2UXB N;  2HHH N;  4JI1 N;  4DV5 N;  1J5E N;  4LFC N;  4JI6 N;  3OTO N;  4LF7 N;  4B3T N;  4DR3 N;  4DV3 N;  4DV6 N;  3J80 d;  4YY3 N;  4AQY N;  4JI3 N;  4JYA N;  5IWA N;  5IT9 d;  1N34 N;  4LFA N;  2UUC N;  4DV4 N;  1HNZ N;  2UUA N;  4YHH N;  4GKK N;  2UXC N;  4DV2 N;  4DR5 N;  4DV7 N;  4DUZ N;  4DR6 N;  3JAM d;  1IBK N;  3J81 d;  4B3M N;  4JI2 N;  4DR7 N;  4LFB N;  2E5L N;  4X64 N;  4JV5 N;  4JI7 N;  4LF6 N;  2F4V N;  1N32 N;  4K0K N;  4JI4 N;  3T1Y N;  5LMU N;  4OX9 N;  3J7A T;  4KHP N;  1HNW N;  5FLX d;  4LF9 N;  4DR4 N;  3T1H N;  1XMO N;  1N36 N;  1I94 N;  1IBM N;  5BR8 N;  1IBL N;  4JI5 N;  2UUB N;  4NXM N;  4X66 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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