2UXBN

Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna gggu in the context of the thermus thermophilus 30s subunit.
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 3
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 2uxbN00
2VQEN 4DR2N 1J5EN 2UU9N 1HNZN 1XNRN 1IBMN 4LF7N 4JYAN 4LF9N 2UXDN 4OX9N 5IWAN 1IBKN 4NXMN 5LMUN 4AQYN 4DV6N 4LFCN 4JI2N 4X64N 2UXBN 1HR0N 4YY3N 4GKJN 3J81d 4X65N 2E5LN 1HNWN 2UXCN 4K0KN 1I94N 4JI7N 4X62N 3T1HN 4DUYN 4JV5N 4DR5N 4B3MN 1N36N 5LMNN 2HHHN 5BR8N 2UUBN 4DV0N 4LF8N 4DV4N 4B3TN 4DR3N 3J7AT 2VQFN 4X66N 4DR4N 1XMQN 1N32N 3OTON 4DV5N 4JI1N 4JI0N 4DR1N 4LF6N 1IBLN 4JI8N 3JAMd 2UUAN 2ZM6N 4LFBN 4DV7N 4LF5N 4JI3N 4JI6N 5IT9d 1XNQN 4DR7N 4B3SN 4DV2N 4LF4N 5A2Qd 5FLXd 4DV3N 1HNXN 1N33N 4KHPN 2UUCN 4DV1N 4YHHN 3T1YN 4JI4N 2F4VN 3J80d 4LFAN 4DR6N 4GKKN 1XMON 4DUZN 1N34N 4JI5N 4B3RN 1FJGN 4NXNN
chains in the Genus database with same CATH superfamily
2VQEN 4DR2N 1J5EN 2UU9N 1HNZN 1XNRN 1IBMN 4LF7N 4JYAN 4LF9N 2UXDN 4OX9N 5IWAN 1IBKN 4NXMN 5LMUN 4AQYN 4DV6N 4LFCN 4JI2N 4X64N 2UXBN 1HR0N 4YY3N 4GKJN 3J81d 4X65N 2E5LN 1HNWN 2UXCN 4K0KN 1I94N 4JI7N 4X62N 3T1HN 4DUYN 4JV5N 4DR5N 4B3MN 1N36N 5LMNN 2HHHN 5BR8N 2UUBN 4DV0N 4LF8N 4DV4N 4B3TN 4DR3N 3J7AT 2VQFN 4X66N 4DR4N 1XMQN 1N32N 3OTON 4DV5N 4JI1N 4JI0N 4DR1N 4LF6N 1IBLN 4JI8N 3JAMd 2UUAN 2ZM6N 4LFBN 4DV7N 4LF5N 4JI3N 4JI6N 5IT9d 1XNQN 4DR7N 4B3SN 4DV2N 4LF4N 5A2Qd 5FLXd 4DV3N 1HNXN 1N33N 4KHPN 2UUCN 4DV1N 4YHHN 3T1YN 4JI4N 2F4VN 3J80d 4LFAN 4DR6N 4GKKN 1XMON 4DUZN 1N34N 4JI5N 4B3RN 1FJGN 4NXNN
chains in the Genus database with same CATH topology
2VQEN 4DR2N 1J5EN 2UU9N 1HNZN 1XNRN 1IBMN 4LF7N 4JYAN 4LF9N 2UXDN 4OX9N 5IWAN 1IBKN 4NXMN 5LMUN 4AQYN 4DV6N 4LFCN 4JI2N 4X64N 2UXBN 1HR0N 4YY3N 4GKJN 3J81d 4X65N 2E5LN 1HNWN 2UXCN 4K0KN 1I94N 4JI7N 4X62N 3T1HN 4DUYN 4JV5N 4DR5N 4B3MN 1N36N 5LMNN 2HHHN 5BR8N 2UUBN 4DV0N 4LF8N 4DV4N 4B3TN 4DR3N 3J7AT 2VQFN 4X66N 4DR4N 1XMQN 1N32N 3OTON 4DV5N 4JI1N 4JI0N 4DR1N 4LF6N 1IBLN 4JI8N 3JAMd 2UUAN 2ZM6N 4LFBN 4DV7N 4LF5N 4JI3N 4JI6N 5IT9d 1XNQN 4DR7N 4B3SN 4DV2N 4LF4N 5A2Qd 5FLXd 4DV3N 1HNXN 1N33N 4KHPN 2UUCN 4DV1N 4YHHN 3T1YN 4JI4N 2F4VN 3J80d 4LFAN 4DR6N 4GKKN 1XMON 4DUZN 1N34N 4JI5N 4B3RN 1FJGN 4NXNN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VQE N;  4DR2 N;  1J5E N;  2UU9 N;  1HNZ N;  1XNR N;  1IBM N;  4LF7 N;  4JYA N;  4LF9 N;  2UXD N;  4OX9 N;  5IWA N;  1IBK N;  4NXM N;  5LMU N;  4AQY N;  4DV6 N;  4LFC N;  4JI2 N;  4X64 N;  2UXB N;  1HR0 N;  4YY3 N;  4GKJ N;  3J81 d;  4X65 N;  2E5L N;  1HNW N;  2UXC N;  4K0K N;  1I94 N;  4JI7 N;  4X62 N;  3T1H N;  4DUY N;  4JV5 N;  4DR5 N;  4B3M N;  1N36 N;  5LMN N;  2HHH N;  5BR8 N;  2UUB N;  4DV0 N;  4LF8 N;  4DV4 N;  4B3T N;  4DR3 N;  3J7A T;  2VQF N;  4X66 N;  4DR4 N;  1XMQ N;  1N32 N;  3OTO N;  4DV5 N;  4JI1 N;  4JI0 N;  4DR1 N;  4LF6 N;  1IBL N;  4JI8 N;  3JAM d;  2UUA N;  2ZM6 N;  4LFB N;  4DV7 N;  4LF5 N;  4JI3 N;  4JI6 N;  5IT9 d;  1XNQ N;  4DR7 N;  4B3S N;  4DV2 N;  4LF4 N;  5A2Q d;  5FLX d;  4DV3 N;  1HNX N;  1N33 N;  4KHP N;  2UUC N;  4DV1 N;  4YHH N;  3T1Y N;  4JI4 N;  2F4V N;  3J80 d;  4LFA N;  4DR6 N;  4GKK N;  1XMO N;  4DUZ N;  1N34 N;  4JI5 N;  4B3R N;  1FJG N;  4NXN N; 
#chains in the Genus database with same CATH topology
 2VQE N;  4DR2 N;  1J5E N;  2UU9 N;  1HNZ N;  1XNR N;  1IBM N;  4LF7 N;  4JYA N;  4LF9 N;  2UXD N;  4OX9 N;  5IWA N;  1IBK N;  4NXM N;  5LMU N;  4AQY N;  4DV6 N;  4LFC N;  4JI2 N;  4X64 N;  2UXB N;  1HR0 N;  4YY3 N;  4GKJ N;  3J81 d;  4X65 N;  2E5L N;  1HNW N;  2UXC N;  4K0K N;  1I94 N;  4JI7 N;  4X62 N;  3T1H N;  4DUY N;  4JV5 N;  4DR5 N;  4B3M N;  1N36 N;  5LMN N;  2HHH N;  5BR8 N;  2UUB N;  4DV0 N;  4LF8 N;  4DV4 N;  4B3T N;  4DR3 N;  3J7A T;  2VQF N;  4X66 N;  4DR4 N;  1XMQ N;  1N32 N;  3OTO N;  4DV5 N;  4JI1 N;  4JI0 N;  4DR1 N;  4LF6 N;  1IBL N;  4JI8 N;  3JAM d;  2UUA N;  2ZM6 N;  4LFB N;  4DV7 N;  4LF5 N;  4JI3 N;  4JI6 N;  5IT9 d;  1XNQ N;  4DR7 N;  4B3S N;  4DV2 N;  4LF4 N;  5A2Q d;  5FLX d;  4DV3 N;  1HNX N;  1N33 N;  4KHP N;  2UUC N;  4DV1 N;  4YHH N;  3T1Y N;  4JI4 N;  2F4V N;  3J80 d;  4LFA N;  4DR6 N;  4GKK N;  1XMO N;  4DUZ N;  1N34 N;  4JI5 N;  4B3R N;  1FJG N;  4NXN N; 
#chains in the Genus database with same CATH homology
 2VQE N;  4DR2 N;  1J5E N;  2UU9 N;  1HNZ N;  1XNR N;  1IBM N;  4LF7 N;  4JYA N;  4LF9 N;  2UXD N;  4OX9 N;  5IWA N;  1IBK N;  4NXM N;  5LMU N;  4AQY N;  4DV6 N;  4LFC N;  4JI2 N;  4X64 N;  2UXB N;  1HR0 N;  4YY3 N;  4GKJ N;  3J81 d;  4X65 N;  2E5L N;  1HNW N;  2UXC N;  4K0K N;  1I94 N;  4JI7 N;  4X62 N;  3T1H N;  4DUY N;  4JV5 N;  4DR5 N;  4B3M N;  1N36 N;  5LMN N;  2HHH N;  5BR8 N;  2UUB N;  4DV0 N;  4LF8 N;  4DV4 N;  4B3T N;  4DR3 N;  3J7A T;  2VQF N;  4X66 N;  4DR4 N;  1XMQ N;  1N32 N;  3OTO N;  4DV5 N;  4JI1 N;  4JI0 N;  4DR1 N;  4LF6 N;  1IBL N;  4JI8 N;  3JAM d;  2UUA N;  2ZM6 N;  4LFB N;  4DV7 N;  4LF5 N;  4JI3 N;  4JI6 N;  5IT9 d;  1XNQ N;  4DR7 N;  4B3S N;  4DV2 N;  4LF4 N;  5A2Q d;  5FLX d;  4DV3 N;  1HNX N;  1N33 N;  4KHP N;  2UUC N;  4DV1 N;  4YHH N;  3T1Y N;  4JI4 N;  2F4V N;  3J80 d;  4LFA N;  4DR6 N;  4GKK N;  1XMO N;  4DUZ N;  1N34 N;  4JI5 N;  4B3R N;  1FJG N;  4NXN N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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