4B3MN

Crystal structure of the 30s ribosome in complex with compound 1
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title 4'-O-Substitutions Determine Selectivity of Aminoglycoside Antibiotics
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 8
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4b3mN00
4JI4N 4DV0N 4DV4N 4DR5N 1IBMN 1I94N 4JI3N 1HNZN 4LF4N 4LFBN 4LF5N 4X62N 4B3RN 4JV5N 1N32N 2F4VN 4LF6N 4LF7N 4DV2N 2VQEN 5LMNN 1IBKN 1J5EN 3J81d 1XMON 4DUYN 4LFAN 2UXBN 4DR4N 5BR8N 4JI1N 1HR0N 4DR6N 4YHHN 4DV3N 4X65N 5LMUN 4DV6N 5IWAN 4LFCN 4K0KN 4JI7N 4DR7N 4JYAN 4JI8N 2UXCN 4B3SN 5FLXd 4YY3N 3T1YN 2HHHN 3T1HN 2UXDN 4DR1N 5IT9d 4NXMN 2VQFN 1IBLN 1N33N 4GKJN 4DV7N 1HNXN 4OX9N 3JAMd 2ZM6N 4DUZN 2E5LN 4DV5N 1HNWN 3J80d 1N34N 2UUAN 3J7AT 2UUCN 1XMQN 1FJGN 4JI5N 4AQYN 4DR2N 4JI2N 3OTON 4JI0N 4LF9N 1N36N 4DV1N 4DR3N 4X64N 4B3MN 4GKKN 4NXNN 5A2Qd 4X66N 2UUBN 4B3TN 4KHPN 1XNRN 2UU9N 4LF8N 1XNQN 4JI6N
chains in the Genus database with same CATH superfamily
4JI4N 4DV0N 4DV4N 4DR5N 1IBMN 1I94N 4JI3N 1HNZN 4LF4N 4LFBN 4LF5N 4X62N 4B3RN 4JV5N 1N32N 2F4VN 4LF6N 4LF7N 4DV2N 2VQEN 5LMNN 1IBKN 1J5EN 3J81d 1XMON 4DUYN 4LFAN 2UXBN 4DR4N 5BR8N 4JI1N 1HR0N 4DR6N 4YHHN 4DV3N 4X65N 5LMUN 4DV6N 5IWAN 4LFCN 4K0KN 4JI7N 4DR7N 4JYAN 4JI8N 2UXCN 4B3SN 5FLXd 4YY3N 3T1YN 2HHHN 3T1HN 2UXDN 4DR1N 5IT9d 4NXMN 2VQFN 1IBLN 1N33N 4GKJN 4DV7N 1HNXN 4OX9N 3JAMd 2ZM6N 4DUZN 2E5LN 4DV5N 1HNWN 3J80d 1N34N 2UUAN 3J7AT 2UUCN 1XMQN 1FJGN 4JI5N 4AQYN 4DR2N 4JI2N 3OTON 4JI0N 4LF9N 1N36N 4DV1N 4DR3N 4X64N 4B3MN 4GKKN 4NXNN 5A2Qd 4X66N 2UUBN 4B3TN 4KHPN 1XNRN 2UU9N 4LF8N 1XNQN 4JI6N
chains in the Genus database with same CATH topology
4JI4N 4DV0N 4DV4N 4DR5N 1IBMN 1I94N 4JI3N 1HNZN 4LF4N 4LFBN 4LF5N 4X62N 4B3RN 4JV5N 1N32N 2F4VN 4LF6N 4LF7N 4DV2N 2VQEN 5LMNN 1IBKN 1J5EN 3J81d 1XMON 4DUYN 4LFAN 2UXBN 4DR4N 5BR8N 4JI1N 1HR0N 4DR6N 4YHHN 4DV3N 4X65N 5LMUN 4DV6N 5IWAN 4LFCN 4K0KN 4JI7N 4DR7N 4JYAN 4JI8N 2UXCN 4B3SN 5FLXd 4YY3N 3T1YN 2HHHN 3T1HN 2UXDN 4DR1N 5IT9d 4NXMN 2VQFN 1IBLN 1N33N 4GKJN 4DV7N 1HNXN 4OX9N 3JAMd 2ZM6N 4DUZN 2E5LN 4DV5N 1HNWN 3J80d 1N34N 2UUAN 3J7AT 2UUCN 1XMQN 1FJGN 4JI5N 4AQYN 4DR2N 4JI2N 3OTON 4JI0N 4LF9N 1N36N 4DV1N 4DR3N 4X64N 4B3MN 4GKKN 4NXNN 5A2Qd 4X66N 2UUBN 4B3TN 4KHPN 1XNRN 2UU9N 4LF8N 1XNQN 4JI6N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI4 N;  4DV0 N;  4DV4 N;  4DR5 N;  1IBM N;  1I94 N;  4JI3 N;  1HNZ N;  4LF4 N;  4LFB N;  4LF5 N;  4X62 N;  4B3R N;  4JV5 N;  1N32 N;  2F4V N;  4LF6 N;  4LF7 N;  4DV2 N;  2VQE N;  5LMN N;  1IBK N;  1J5E N;  3J81 d;  1XMO N;  4DUY N;  4LFA N;  2UXB N;  4DR4 N;  5BR8 N;  4JI1 N;  1HR0 N;  4DR6 N;  4YHH N;  4DV3 N;  4X65 N;  5LMU N;  4DV6 N;  5IWA N;  4LFC N;  4K0K N;  4JI7 N;  4DR7 N;  4JYA N;  4JI8 N;  2UXC N;  4B3S N;  5FLX d;  4YY3 N;  3T1Y N;  2HHH N;  3T1H N;  2UXD N;  4DR1 N;  5IT9 d;  4NXM N;  2VQF N;  1IBL N;  1N33 N;  4GKJ N;  4DV7 N;  1HNX N;  4OX9 N;  3JAM d;  2ZM6 N;  4DUZ N;  2E5L N;  4DV5 N;  1HNW N;  3J80 d;  1N34 N;  2UUA N;  3J7A T;  2UUC N;  1XMQ N;  1FJG N;  4JI5 N;  4AQY N;  4DR2 N;  4JI2 N;  3OTO N;  4JI0 N;  4LF9 N;  1N36 N;  4DV1 N;  4DR3 N;  4X64 N;  4B3M N;  4GKK N;  4NXN N;  5A2Q d;  4X66 N;  2UUB N;  4B3T N;  4KHP N;  1XNR N;  2UU9 N;  4LF8 N;  1XNQ N;  4JI6 N; 
#chains in the Genus database with same CATH topology
 4JI4 N;  4DV0 N;  4DV4 N;  4DR5 N;  1IBM N;  1I94 N;  4JI3 N;  1HNZ N;  4LF4 N;  4LFB N;  4LF5 N;  4X62 N;  4B3R N;  4JV5 N;  1N32 N;  2F4V N;  4LF6 N;  4LF7 N;  4DV2 N;  2VQE N;  5LMN N;  1IBK N;  1J5E N;  3J81 d;  1XMO N;  4DUY N;  4LFA N;  2UXB N;  4DR4 N;  5BR8 N;  4JI1 N;  1HR0 N;  4DR6 N;  4YHH N;  4DV3 N;  4X65 N;  5LMU N;  4DV6 N;  5IWA N;  4LFC N;  4K0K N;  4JI7 N;  4DR7 N;  4JYA N;  4JI8 N;  2UXC N;  4B3S N;  5FLX d;  4YY3 N;  3T1Y N;  2HHH N;  3T1H N;  2UXD N;  4DR1 N;  5IT9 d;  4NXM N;  2VQF N;  1IBL N;  1N33 N;  4GKJ N;  4DV7 N;  1HNX N;  4OX9 N;  3JAM d;  2ZM6 N;  4DUZ N;  2E5L N;  4DV5 N;  1HNW N;  3J80 d;  1N34 N;  2UUA N;  3J7A T;  2UUC N;  1XMQ N;  1FJG N;  4JI5 N;  4AQY N;  4DR2 N;  4JI2 N;  3OTO N;  4JI0 N;  4LF9 N;  1N36 N;  4DV1 N;  4DR3 N;  4X64 N;  4B3M N;  4GKK N;  4NXN N;  5A2Q d;  4X66 N;  2UUB N;  4B3T N;  4KHP N;  1XNR N;  2UU9 N;  4LF8 N;  1XNQ N;  4JI6 N; 
#chains in the Genus database with same CATH homology
 4JI4 N;  4DV0 N;  4DV4 N;  4DR5 N;  1IBM N;  1I94 N;  4JI3 N;  1HNZ N;  4LF4 N;  4LFB N;  4LF5 N;  4X62 N;  4B3R N;  4JV5 N;  1N32 N;  2F4V N;  4LF6 N;  4LF7 N;  4DV2 N;  2VQE N;  5LMN N;  1IBK N;  1J5E N;  3J81 d;  1XMO N;  4DUY N;  4LFA N;  2UXB N;  4DR4 N;  5BR8 N;  4JI1 N;  1HR0 N;  4DR6 N;  4YHH N;  4DV3 N;  4X65 N;  5LMU N;  4DV6 N;  5IWA N;  4LFC N;  4K0K N;  4JI7 N;  4DR7 N;  4JYA N;  4JI8 N;  2UXC N;  4B3S N;  5FLX d;  4YY3 N;  3T1Y N;  2HHH N;  3T1H N;  2UXD N;  4DR1 N;  5IT9 d;  4NXM N;  2VQF N;  1IBL N;  1N33 N;  4GKJ N;  4DV7 N;  1HNX N;  4OX9 N;  3JAM d;  2ZM6 N;  4DUZ N;  2E5L N;  4DV5 N;  1HNW N;  3J80 d;  1N34 N;  2UUA N;  3J7A T;  2UUC N;  1XMQ N;  1FJG N;  4JI5 N;  4AQY N;  4DR2 N;  4JI2 N;  3OTO N;  4JI0 N;  4LF9 N;  1N36 N;  4DV1 N;  4DR3 N;  4X64 N;  4B3M N;  4GKK N;  4NXN N;  5A2Q d;  4X66 N;  2UUB N;  4B3T N;  4KHP N;  1XNR N;  2UU9 N;  4LF8 N;  1XNQ N;  4JI6 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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