4OX9N

Crystal structure of the aminoglycoside resistance methyltransferase npma bound to the 30s ribosomal subunit
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
source organism Escherichia coli
molecule keywords 16S rRNA
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2014-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4ox9N00
4DR4N 4LF6N 2ZM6N 1IBLN 3J81d 4JV5N 4DUZN 4JI4N 3J80d 2UXDN 5IWAN 4B3TN 1HR0N 4JI2N 3T1HN 1HNZN 1IBMN 5A2Qd 4X62N 4YHHN 4K0KN 4DR6N 4JI6N 5LMUN 4LFBN 2UU9N 4LF9N 4LF4N 4DR7N 4X65N 3J7AT 4JI7N 2VQFN 4JYAN 4LF8N 5LMNN 4GKJN 1N34N 4AQYN 4DV6N 4DV1N 4YY3N 4X64N 4DR2N 4JI5N 4LF7N 4DUYN 4B3MN 4JI1N 4X66N 2UXCN 1XMQN 1N32N 4OX9N 4LF5N 4DV0N 4KHPN 3JAMd 1I94N 5IT9d 1XNRN 2UUCN 4NXMN 2UUBN 4JI8N 4DV2N 2HHHN 1IBKN 1XMON 2F4VN 4JI0N 1N33N 4DR3N 5FLXd 3OTON 1J5EN 4DV7N 4LFCN 4DV3N 3T1YN 1HNWN 4GKKN 5BR8N 4JI3N 4DR1N 2UXBN 4LFAN 4NXNN 2UUAN 2VQEN 2E5LN 4DV5N 4B3RN 4DR5N 1FJGN 1HNXN 1N36N 4B3SN 1XNQN 4DV4N
chains in the Genus database with same CATH superfamily
4DR4N 4LF6N 2ZM6N 1IBLN 3J81d 4JV5N 4DUZN 4JI4N 3J80d 2UXDN 5IWAN 4B3TN 1HR0N 4JI2N 3T1HN 1HNZN 1IBMN 5A2Qd 4X62N 4YHHN 4K0KN 4DR6N 4JI6N 5LMUN 4LFBN 2UU9N 4LF9N 4LF4N 4DR7N 4X65N 3J7AT 4JI7N 2VQFN 4JYAN 4LF8N 5LMNN 4GKJN 1N34N 4AQYN 4DV6N 4DV1N 4YY3N 4X64N 4DR2N 4JI5N 4LF7N 4DUYN 4B3MN 4JI1N 4X66N 2UXCN 1XMQN 1N32N 4OX9N 4LF5N 4DV0N 4KHPN 3JAMd 1I94N 5IT9d 1XNRN 2UUCN 4NXMN 2UUBN 4JI8N 4DV2N 2HHHN 1IBKN 1XMON 2F4VN 4JI0N 1N33N 4DR3N 5FLXd 3OTON 1J5EN 4DV7N 4LFCN 4DV3N 3T1YN 1HNWN 4GKKN 5BR8N 4JI3N 4DR1N 2UXBN 4LFAN 4NXNN 2UUAN 2VQEN 2E5LN 4DV5N 4B3RN 4DR5N 1FJGN 1HNXN 1N36N 4B3SN 1XNQN 4DV4N
chains in the Genus database with same CATH topology
4DR4N 4LF6N 2ZM6N 1IBLN 3J81d 4JV5N 4DUZN 4JI4N 3J80d 2UXDN 5IWAN 4B3TN 1HR0N 4JI2N 3T1HN 1HNZN 1IBMN 5A2Qd 4X62N 4YHHN 4K0KN 4DR6N 4JI6N 5LMUN 4LFBN 2UU9N 4LF9N 4LF4N 4DR7N 4X65N 3J7AT 4JI7N 2VQFN 4JYAN 4LF8N 5LMNN 4GKJN 1N34N 4AQYN 4DV6N 4DV1N 4YY3N 4X64N 4DR2N 4JI5N 4LF7N 4DUYN 4B3MN 4JI1N 4X66N 2UXCN 1XMQN 1N32N 4OX9N 4LF5N 4DV0N 4KHPN 3JAMd 1I94N 5IT9d 1XNRN 2UUCN 4NXMN 2UUBN 4JI8N 4DV2N 2HHHN 1IBKN 1XMON 2F4VN 4JI0N 1N33N 4DR3N 5FLXd 3OTON 1J5EN 4DV7N 4LFCN 4DV3N 3T1YN 1HNWN 4GKKN 5BR8N 4JI3N 4DR1N 2UXBN 4LFAN 4NXNN 2UUAN 2VQEN 2E5LN 4DV5N 4B3RN 4DR5N 1FJGN 1HNXN 1N36N 4B3SN 1XNQN 4DV4N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DR4 N;  4LF6 N;  2ZM6 N;  1IBL N;  3J81 d;  4JV5 N;  4DUZ N;  4JI4 N;  3J80 d;  2UXD N;  5IWA N;  4B3T N;  1HR0 N;  4JI2 N;  3T1H N;  1HNZ N;  1IBM N;  5A2Q d;  4X62 N;  4YHH N;  4K0K N;  4DR6 N;  4JI6 N;  5LMU N;  4LFB N;  2UU9 N;  4LF9 N;  4LF4 N;  4DR7 N;  4X65 N;  3J7A T;  4JI7 N;  2VQF N;  4JYA N;  4LF8 N;  5LMN N;  4GKJ N;  1N34 N;  4AQY N;  4DV6 N;  4DV1 N;  4YY3 N;  4X64 N;  4DR2 N;  4JI5 N;  4LF7 N;  4DUY N;  4B3M N;  4JI1 N;  4X66 N;  2UXC N;  1XMQ N;  1N32 N;  4OX9 N;  4LF5 N;  4DV0 N;  4KHP N;  3JAM d;  1I94 N;  5IT9 d;  1XNR N;  2UUC N;  4NXM N;  2UUB N;  4JI8 N;  4DV2 N;  2HHH N;  1IBK N;  1XMO N;  2F4V N;  4JI0 N;  1N33 N;  4DR3 N;  5FLX d;  3OTO N;  1J5E N;  4DV7 N;  4LFC N;  4DV3 N;  3T1Y N;  1HNW N;  4GKK N;  5BR8 N;  4JI3 N;  4DR1 N;  2UXB N;  4LFA N;  4NXN N;  2UUA N;  2VQE N;  2E5L N;  4DV5 N;  4B3R N;  4DR5 N;  1FJG N;  1HNX N;  1N36 N;  4B3S N;  1XNQ N;  4DV4 N; 
#chains in the Genus database with same CATH topology
 4DR4 N;  4LF6 N;  2ZM6 N;  1IBL N;  3J81 d;  4JV5 N;  4DUZ N;  4JI4 N;  3J80 d;  2UXD N;  5IWA N;  4B3T N;  1HR0 N;  4JI2 N;  3T1H N;  1HNZ N;  1IBM N;  5A2Q d;  4X62 N;  4YHH N;  4K0K N;  4DR6 N;  4JI6 N;  5LMU N;  4LFB N;  2UU9 N;  4LF9 N;  4LF4 N;  4DR7 N;  4X65 N;  3J7A T;  4JI7 N;  2VQF N;  4JYA N;  4LF8 N;  5LMN N;  4GKJ N;  1N34 N;  4AQY N;  4DV6 N;  4DV1 N;  4YY3 N;  4X64 N;  4DR2 N;  4JI5 N;  4LF7 N;  4DUY N;  4B3M N;  4JI1 N;  4X66 N;  2UXC N;  1XMQ N;  1N32 N;  4OX9 N;  4LF5 N;  4DV0 N;  4KHP N;  3JAM d;  1I94 N;  5IT9 d;  1XNR N;  2UUC N;  4NXM N;  2UUB N;  4JI8 N;  4DV2 N;  2HHH N;  1IBK N;  1XMO N;  2F4V N;  4JI0 N;  1N33 N;  4DR3 N;  5FLX d;  3OTO N;  1J5E N;  4DV7 N;  4LFC N;  4DV3 N;  3T1Y N;  1HNW N;  4GKK N;  5BR8 N;  4JI3 N;  4DR1 N;  2UXB N;  4LFA N;  4NXN N;  2UUA N;  2VQE N;  2E5L N;  4DV5 N;  4B3R N;  4DR5 N;  1FJG N;  1HNX N;  1N36 N;  4B3S N;  1XNQ N;  4DV4 N; 
#chains in the Genus database with same CATH homology
 4DR4 N;  4LF6 N;  2ZM6 N;  1IBL N;  3J81 d;  4JV5 N;  4DUZ N;  4JI4 N;  3J80 d;  2UXD N;  5IWA N;  4B3T N;  1HR0 N;  4JI2 N;  3T1H N;  1HNZ N;  1IBM N;  5A2Q d;  4X62 N;  4YHH N;  4K0K N;  4DR6 N;  4JI6 N;  5LMU N;  4LFB N;  2UU9 N;  4LF9 N;  4LF4 N;  4DR7 N;  4X65 N;  3J7A T;  4JI7 N;  2VQF N;  4JYA N;  4LF8 N;  5LMN N;  4GKJ N;  1N34 N;  4AQY N;  4DV6 N;  4DV1 N;  4YY3 N;  4X64 N;  4DR2 N;  4JI5 N;  4LF7 N;  4DUY N;  4B3M N;  4JI1 N;  4X66 N;  2UXC N;  1XMQ N;  1N32 N;  4OX9 N;  4LF5 N;  4DV0 N;  4KHP N;  3JAM d;  1I94 N;  5IT9 d;  1XNR N;  2UUC N;  4NXM N;  2UUB N;  4JI8 N;  4DV2 N;  2HHH N;  1IBK N;  1XMO N;  2F4V N;  4JI0 N;  1N33 N;  4DR3 N;  5FLX d;  3OTO N;  1J5E N;  4DV7 N;  4LFC N;  4DV3 N;  3T1Y N;  1HNW N;  4GKK N;  5BR8 N;  4JI3 N;  4DR1 N;  2UXB N;  4LFA N;  4NXN N;  2UUA N;  2VQE N;  2E5L N;  4DV5 N;  4B3R N;  4DR5 N;  1FJG N;  1HNX N;  1N36 N;  4B3S N;  1XNQ N;  4DV4 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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