4DR4N

Crystal structure of the thermus thermophilus (hb8) 30s ribosomal subunit with codon, cognate transfer rna anticodon stem-loop and multiple copies of paromomycin molecules bound
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin-induced misreading of the genetic code.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2012-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4dr4N00
1XMQN 4JI5N 4DV5N 4X66N 4LFBN 3J81d 4NXNN 4GKKN 4OX9N 2UU9N 2UUCN 4YHHN 4B3RN 1IBMN 2VQEN 4X64N 4B3TN 4LFCN 4JI1N 4DV1N 2F4VN 4B3MN 1IBLN 4GKJN 5LMNN 4K0KN 4LFAN 2UXCN 1N36N 1J5EN 1XMON 1XNQN 5LMUN 1HNZN 1HR0N 4DV4N 4LF8N 4JI8N 5FLXd 4JI6N 4DV0N 3OTON 4JI0N 3JAMd 4JI3N 4LF7N 5A2Qd 4DR5N 4DR7N 1N33N 4JI7N 4LF5N 4DR1N 1IBKN 4DV3N 5BR8N 4NXMN 2VQFN 3J80d 4JYAN 5IWAN 4LF9N 2UXDN 2UUAN 1N32N 1HNXN 5IT9d 4X62N 1XNRN 4LF6N 3T1YN 4AQYN 4JV5N 4X65N 1N34N 4B3SN 4DR4N 4DR3N 4DV7N 1I94N 1HNWN 3T1HN 4DR6N 2UUBN 2E5LN 2ZM6N 4DV2N 4JI4N 4LF4N 1FJGN 2HHHN 3J7AT 4JI2N 4KHPN 2UXBN 4YY3N 4DR2N 4DUYN 4DUZN 4DV6N
chains in the Genus database with same CATH superfamily
1XMQN 4JI5N 4DV5N 4X66N 4LFBN 3J81d 4NXNN 4GKKN 4OX9N 2UU9N 2UUCN 4YHHN 4B3RN 1IBMN 2VQEN 4X64N 4B3TN 4LFCN 4JI1N 4DV1N 2F4VN 4B3MN 1IBLN 4GKJN 5LMNN 4K0KN 4LFAN 2UXCN 1N36N 1J5EN 1XMON 1XNQN 5LMUN 1HNZN 1HR0N 4DV4N 4LF8N 4JI8N 5FLXd 4JI6N 4DV0N 3OTON 4JI0N 3JAMd 4JI3N 4LF7N 5A2Qd 4DR5N 4DR7N 1N33N 4JI7N 4LF5N 4DR1N 1IBKN 4DV3N 5BR8N 4NXMN 2VQFN 3J80d 4JYAN 5IWAN 4LF9N 2UXDN 2UUAN 1N32N 1HNXN 5IT9d 4X62N 1XNRN 4LF6N 3T1YN 4AQYN 4JV5N 4X65N 1N34N 4B3SN 4DR4N 4DR3N 4DV7N 1I94N 1HNWN 3T1HN 4DR6N 2UUBN 2E5LN 2ZM6N 4DV2N 4JI4N 4LF4N 1FJGN 2HHHN 3J7AT 4JI2N 4KHPN 2UXBN 4YY3N 4DR2N 4DUYN 4DUZN 4DV6N
chains in the Genus database with same CATH topology
1XMQN 4JI5N 4DV5N 4X66N 4LFBN 3J81d 4NXNN 4GKKN 4OX9N 2UU9N 2UUCN 4YHHN 4B3RN 1IBMN 2VQEN 4X64N 4B3TN 4LFCN 4JI1N 4DV1N 2F4VN 4B3MN 1IBLN 4GKJN 5LMNN 4K0KN 4LFAN 2UXCN 1N36N 1J5EN 1XMON 1XNQN 5LMUN 1HNZN 1HR0N 4DV4N 4LF8N 4JI8N 5FLXd 4JI6N 4DV0N 3OTON 4JI0N 3JAMd 4JI3N 4LF7N 5A2Qd 4DR5N 4DR7N 1N33N 4JI7N 4LF5N 4DR1N 1IBKN 4DV3N 5BR8N 4NXMN 2VQFN 3J80d 4JYAN 5IWAN 4LF9N 2UXDN 2UUAN 1N32N 1HNXN 5IT9d 4X62N 1XNRN 4LF6N 3T1YN 4AQYN 4JV5N 4X65N 1N34N 4B3SN 4DR4N 4DR3N 4DV7N 1I94N 1HNWN 3T1HN 4DR6N 2UUBN 2E5LN 2ZM6N 4DV2N 4JI4N 4LF4N 1FJGN 2HHHN 3J7AT 4JI2N 4KHPN 2UXBN 4YY3N 4DR2N 4DUYN 4DUZN 4DV6N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XMQ N;  4JI5 N;  4DV5 N;  4X66 N;  4LFB N;  3J81 d;  4NXN N;  4GKK N;  4OX9 N;  2UU9 N;  2UUC N;  4YHH N;  4B3R N;  1IBM N;  2VQE N;  4X64 N;  4B3T N;  4LFC N;  4JI1 N;  4DV1 N;  2F4V N;  4B3M N;  1IBL N;  4GKJ N;  5LMN N;  4K0K N;  4LFA N;  2UXC N;  1N36 N;  1J5E N;  1XMO N;  1XNQ N;  5LMU N;  1HNZ N;  1HR0 N;  4DV4 N;  4LF8 N;  4JI8 N;  5FLX d;  4JI6 N;  4DV0 N;  3OTO N;  4JI0 N;  3JAM d;  4JI3 N;  4LF7 N;  5A2Q d;  4DR5 N;  4DR7 N;  1N33 N;  4JI7 N;  4LF5 N;  4DR1 N;  1IBK N;  4DV3 N;  5BR8 N;  4NXM N;  2VQF N;  3J80 d;  4JYA N;  5IWA N;  4LF9 N;  2UXD N;  2UUA N;  1N32 N;  1HNX N;  5IT9 d;  4X62 N;  1XNR N;  4LF6 N;  3T1Y N;  4AQY N;  4JV5 N;  4X65 N;  1N34 N;  4B3S N;  4DR4 N;  4DR3 N;  4DV7 N;  1I94 N;  1HNW N;  3T1H N;  4DR6 N;  2UUB N;  2E5L N;  2ZM6 N;  4DV2 N;  4JI4 N;  4LF4 N;  1FJG N;  2HHH N;  3J7A T;  4JI2 N;  4KHP N;  2UXB N;  4YY3 N;  4DR2 N;  4DUY N;  4DUZ N;  4DV6 N; 
#chains in the Genus database with same CATH topology
 1XMQ N;  4JI5 N;  4DV5 N;  4X66 N;  4LFB N;  3J81 d;  4NXN N;  4GKK N;  4OX9 N;  2UU9 N;  2UUC N;  4YHH N;  4B3R N;  1IBM N;  2VQE N;  4X64 N;  4B3T N;  4LFC N;  4JI1 N;  4DV1 N;  2F4V N;  4B3M N;  1IBL N;  4GKJ N;  5LMN N;  4K0K N;  4LFA N;  2UXC N;  1N36 N;  1J5E N;  1XMO N;  1XNQ N;  5LMU N;  1HNZ N;  1HR0 N;  4DV4 N;  4LF8 N;  4JI8 N;  5FLX d;  4JI6 N;  4DV0 N;  3OTO N;  4JI0 N;  3JAM d;  4JI3 N;  4LF7 N;  5A2Q d;  4DR5 N;  4DR7 N;  1N33 N;  4JI7 N;  4LF5 N;  4DR1 N;  1IBK N;  4DV3 N;  5BR8 N;  4NXM N;  2VQF N;  3J80 d;  4JYA N;  5IWA N;  4LF9 N;  2UXD N;  2UUA N;  1N32 N;  1HNX N;  5IT9 d;  4X62 N;  1XNR N;  4LF6 N;  3T1Y N;  4AQY N;  4JV5 N;  4X65 N;  1N34 N;  4B3S N;  4DR4 N;  4DR3 N;  4DV7 N;  1I94 N;  1HNW N;  3T1H N;  4DR6 N;  2UUB N;  2E5L N;  2ZM6 N;  4DV2 N;  4JI4 N;  4LF4 N;  1FJG N;  2HHH N;  3J7A T;  4JI2 N;  4KHP N;  2UXB N;  4YY3 N;  4DR2 N;  4DUY N;  4DUZ N;  4DV6 N; 
#chains in the Genus database with same CATH homology
 1XMQ N;  4JI5 N;  4DV5 N;  4X66 N;  4LFB N;  3J81 d;  4NXN N;  4GKK N;  4OX9 N;  2UU9 N;  2UUC N;  4YHH N;  4B3R N;  1IBM N;  2VQE N;  4X64 N;  4B3T N;  4LFC N;  4JI1 N;  4DV1 N;  2F4V N;  4B3M N;  1IBL N;  4GKJ N;  5LMN N;  4K0K N;  4LFA N;  2UXC N;  1N36 N;  1J5E N;  1XMO N;  1XNQ N;  5LMU N;  1HNZ N;  1HR0 N;  4DV4 N;  4LF8 N;  4JI8 N;  5FLX d;  4JI6 N;  4DV0 N;  3OTO N;  4JI0 N;  3JAM d;  4JI3 N;  4LF7 N;  5A2Q d;  4DR5 N;  4DR7 N;  1N33 N;  4JI7 N;  4LF5 N;  4DR1 N;  1IBK N;  4DV3 N;  5BR8 N;  4NXM N;  2VQF N;  3J80 d;  4JYA N;  5IWA N;  4LF9 N;  2UXD N;  2UUA N;  1N32 N;  1HNX N;  5IT9 d;  4X62 N;  1XNR N;  4LF6 N;  3T1Y N;  4AQY N;  4JV5 N;  4X65 N;  1N34 N;  4B3S N;  4DR4 N;  4DR3 N;  4DV7 N;  1I94 N;  1HNW N;  3T1H N;  4DR6 N;  2UUB N;  2E5L N;  2ZM6 N;  4DV2 N;  4JI4 N;  4LF4 N;  1FJG N;  2HHH N;  3J7A T;  4JI2 N;  4KHP N;  2UXB N;  4YY3 N;  4DR2 N;  4DUY N;  4DUZ N;  4DV6 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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