4DUYN

Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, u13c
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A structural basis for streptomycin resistance
rcsb
molecule tags Ribosome
molecule keywords 16S rRNA
total genus 11
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 4duyN00
4JI7N 2HHHN 3J80d 4YY3N 3J81d 4JI1N 5IWAN 3T1HN 4JI2N 1FJGN 1N33N 1N36N 5LMUN 1IBLN 1XNQN 4DR6N 4B3TN 1HNWN 4GKJN 1I94N 1N32N 5LMNN 4LF7N 4LF8N 3OTON 4DR2N 4OX9N 4X66N 4LF4N 2UU9N 1IBKN 4JI3N 2UXBN 4LFBN 4JI4N 4DV3N 1HNXN 4LFCN 4DUZN 1XMON 1J5EN 5BR8N 3T1YN 4JI0N 4DV0N 4DR4N 1HNZN 2VQEN 4NXMN 4LFAN 2UUCN 4DV6N 4DV2N 4X64N 4DV5N 4DR1N 4DR3N 4DR7N 4DUYN 4X65N 2UXDN 4LF9N 4DV7N 2ZM6N 4DV1N 2F4VN 4YHHN 3JAMd 1XNRN 1HR0N 4KHPN 4LF6N 2VQFN 2UUAN 2E5LN 1IBMN 4AQYN 5A2Qd 5IT9d 4X62N 4B3MN 4LF5N 4NXNN 4DV4N 5FLXd 4B3RN 4JI5N 4JYAN 4JI6N 1XMQN 4JV5N 4GKKN 4DR5N 4JI8N 1N34N 2UUBN 2UXCN 4K0KN 4B3SN 3J7AT
chains in the Genus database with same CATH superfamily
4JI7N 2HHHN 3J80d 4YY3N 3J81d 4JI1N 5IWAN 3T1HN 4JI2N 1FJGN 1N33N 1N36N 5LMUN 1IBLN 1XNQN 4DR6N 4B3TN 1HNWN 4GKJN 1I94N 1N32N 5LMNN 4LF7N 4LF8N 3OTON 4DR2N 4OX9N 4X66N 4LF4N 2UU9N 1IBKN 4JI3N 2UXBN 4LFBN 4JI4N 4DV3N 1HNXN 4LFCN 4DUZN 1XMON 1J5EN 5BR8N 3T1YN 4JI0N 4DV0N 4DR4N 1HNZN 2VQEN 4NXMN 4LFAN 2UUCN 4DV6N 4DV2N 4X64N 4DV5N 4DR1N 4DR3N 4DR7N 4DUYN 4X65N 2UXDN 4LF9N 4DV7N 2ZM6N 4DV1N 2F4VN 4YHHN 3JAMd 1XNRN 1HR0N 4KHPN 4LF6N 2VQFN 2UUAN 2E5LN 1IBMN 4AQYN 5A2Qd 5IT9d 4X62N 4B3MN 4LF5N 4NXNN 4DV4N 5FLXd 4B3RN 4JI5N 4JYAN 4JI6N 1XMQN 4JV5N 4GKKN 4DR5N 4JI8N 1N34N 2UUBN 2UXCN 4K0KN 4B3SN 3J7AT
chains in the Genus database with same CATH topology
4JI7N 2HHHN 3J80d 4YY3N 3J81d 4JI1N 5IWAN 3T1HN 4JI2N 1FJGN 1N33N 1N36N 5LMUN 1IBLN 1XNQN 4DR6N 4B3TN 1HNWN 4GKJN 1I94N 1N32N 5LMNN 4LF7N 4LF8N 3OTON 4DR2N 4OX9N 4X66N 4LF4N 2UU9N 1IBKN 4JI3N 2UXBN 4LFBN 4JI4N 4DV3N 1HNXN 4LFCN 4DUZN 1XMON 1J5EN 5BR8N 3T1YN 4JI0N 4DV0N 4DR4N 1HNZN 2VQEN 4NXMN 4LFAN 2UUCN 4DV6N 4DV2N 4X64N 4DV5N 4DR1N 4DR3N 4DR7N 4DUYN 4X65N 2UXDN 4LF9N 4DV7N 2ZM6N 4DV1N 2F4VN 4YHHN 3JAMd 1XNRN 1HR0N 4KHPN 4LF6N 2VQFN 2UUAN 2E5LN 1IBMN 4AQYN 5A2Qd 5IT9d 4X62N 4B3MN 4LF5N 4NXNN 4DV4N 5FLXd 4B3RN 4JI5N 4JYAN 4JI6N 1XMQN 4JV5N 4GKKN 4DR5N 4JI8N 1N34N 2UUBN 2UXCN 4K0KN 4B3SN 3J7AT
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI7 N;  2HHH N;  3J80 d;  4YY3 N;  3J81 d;  4JI1 N;  5IWA N;  3T1H N;  4JI2 N;  1FJG N;  1N33 N;  1N36 N;  5LMU N;  1IBL N;  1XNQ N;  4DR6 N;  4B3T N;  1HNW N;  4GKJ N;  1I94 N;  1N32 N;  5LMN N;  4LF7 N;  4LF8 N;  3OTO N;  4DR2 N;  4OX9 N;  4X66 N;  4LF4 N;  2UU9 N;  1IBK N;  4JI3 N;  2UXB N;  4LFB N;  4JI4 N;  4DV3 N;  1HNX N;  4LFC N;  4DUZ N;  1XMO N;  1J5E N;  5BR8 N;  3T1Y N;  4JI0 N;  4DV0 N;  4DR4 N;  1HNZ N;  2VQE N;  4NXM N;  4LFA N;  2UUC N;  4DV6 N;  4DV2 N;  4X64 N;  4DV5 N;  4DR1 N;  4DR3 N;  4DR7 N;  4DUY N;  4X65 N;  2UXD N;  4LF9 N;  4DV7 N;  2ZM6 N;  4DV1 N;  2F4V N;  4YHH N;  3JAM d;  1XNR N;  1HR0 N;  4KHP N;  4LF6 N;  2VQF N;  2UUA N;  2E5L N;  1IBM N;  4AQY N;  5A2Q d;  5IT9 d;  4X62 N;  4B3M N;  4LF5 N;  4NXN N;  4DV4 N;  5FLX d;  4B3R N;  4JI5 N;  4JYA N;  4JI6 N;  1XMQ N;  4JV5 N;  4GKK N;  4DR5 N;  4JI8 N;  1N34 N;  2UUB N;  2UXC N;  4K0K N;  4B3S N;  3J7A T; 
#chains in the Genus database with same CATH topology
 4JI7 N;  2HHH N;  3J80 d;  4YY3 N;  3J81 d;  4JI1 N;  5IWA N;  3T1H N;  4JI2 N;  1FJG N;  1N33 N;  1N36 N;  5LMU N;  1IBL N;  1XNQ N;  4DR6 N;  4B3T N;  1HNW N;  4GKJ N;  1I94 N;  1N32 N;  5LMN N;  4LF7 N;  4LF8 N;  3OTO N;  4DR2 N;  4OX9 N;  4X66 N;  4LF4 N;  2UU9 N;  1IBK N;  4JI3 N;  2UXB N;  4LFB N;  4JI4 N;  4DV3 N;  1HNX N;  4LFC N;  4DUZ N;  1XMO N;  1J5E N;  5BR8 N;  3T1Y N;  4JI0 N;  4DV0 N;  4DR4 N;  1HNZ N;  2VQE N;  4NXM N;  4LFA N;  2UUC N;  4DV6 N;  4DV2 N;  4X64 N;  4DV5 N;  4DR1 N;  4DR3 N;  4DR7 N;  4DUY N;  4X65 N;  2UXD N;  4LF9 N;  4DV7 N;  2ZM6 N;  4DV1 N;  2F4V N;  4YHH N;  3JAM d;  1XNR N;  1HR0 N;  4KHP N;  4LF6 N;  2VQF N;  2UUA N;  2E5L N;  1IBM N;  4AQY N;  5A2Q d;  5IT9 d;  4X62 N;  4B3M N;  4LF5 N;  4NXN N;  4DV4 N;  5FLX d;  4B3R N;  4JI5 N;  4JYA N;  4JI6 N;  1XMQ N;  4JV5 N;  4GKK N;  4DR5 N;  4JI8 N;  1N34 N;  2UUB N;  2UXC N;  4K0K N;  4B3S N;  3J7A T; 
#chains in the Genus database with same CATH homology
 4JI7 N;  2HHH N;  3J80 d;  4YY3 N;  3J81 d;  4JI1 N;  5IWA N;  3T1H N;  4JI2 N;  1FJG N;  1N33 N;  1N36 N;  5LMU N;  1IBL N;  1XNQ N;  4DR6 N;  4B3T N;  1HNW N;  4GKJ N;  1I94 N;  1N32 N;  5LMN N;  4LF7 N;  4LF8 N;  3OTO N;  4DR2 N;  4OX9 N;  4X66 N;  4LF4 N;  2UU9 N;  1IBK N;  4JI3 N;  2UXB N;  4LFB N;  4JI4 N;  4DV3 N;  1HNX N;  4LFC N;  4DUZ N;  1XMO N;  1J5E N;  5BR8 N;  3T1Y N;  4JI0 N;  4DV0 N;  4DR4 N;  1HNZ N;  2VQE N;  4NXM N;  4LFA N;  2UUC N;  4DV6 N;  4DV2 N;  4X64 N;  4DV5 N;  4DR1 N;  4DR3 N;  4DR7 N;  4DUY N;  4X65 N;  2UXD N;  4LF9 N;  4DV7 N;  2ZM6 N;  4DV1 N;  2F4V N;  4YHH N;  3JAM d;  1XNR N;  1HR0 N;  4KHP N;  4LF6 N;  2VQF N;  2UUA N;  2E5L N;  1IBM N;  4AQY N;  5A2Q d;  5IT9 d;  4X62 N;  4B3M N;  4LF5 N;  4NXN N;  4DV4 N;  5FLX d;  4B3R N;  4JI5 N;  4JYA N;  4JI6 N;  1XMQ N;  4JV5 N;  4GKK N;  4DR5 N;  4JI8 N;  1N34 N;  2UUB N;  2UXC N;  4K0K N;  4B3S N;  3J7A T; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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