2UXDN

Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna cggg in the context of the thermus thermophilus 30s subunit.
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
60
structure length
60
Chain Sequence
ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
pubmed doi rcsb
total genus 5
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00253 Ribosomal_S14 Ribosomal protein S14p/S29e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14; Chain N 30s Ribosomal Protein S14; Chain N 2uxdN00
1XMQN 2UU9N 2UXDN 4LF7N 1FJGN 3OTON 4LF4N 4DV5N 4DV4N 5LMUN 2UUBN 2UXCN 4DV1N 4K0KN 2HHHN 4JI1N 3T1YN 4B3RN 2ZM6N 1HNZN 1N33N 4B3TN 1HR0N 4DV6N 4JI4N 5FLXd 4LF6N 4JI8N 4DR3N 2UUCN 4LF8N 4AQYN 4JYAN 4GKJN 4KHPN 1HNWN 1XNQN 4DR5N 4LF9N 5IT9d 3T1HN 4LFBN 4DV7N 4DR7N 4LF5N 4YHHN 2F4VN 4JI3N 3JAMd 3J80d 4B3MN 4DV3N 2E5LN 4JV5N 4DR6N 4DV2N 1XNRN 4JI6N 4DUYN 4DUZN 4NXMN 4B3SN 2UXBN 4X62N 5IWAN 1I94N 4DR1N 4JI2N 2UUAN 1XMON 4X66N 4DR2N 4DR4N 4GKKN 4JI0N 1HNXN 3J81d 4NXNN 3J7AT 4LFAN 1J5EN 4JI5N 2VQEN 1IBKN 1IBMN 4YY3N 5A2Qd 4JI7N 4X64N 2VQFN 1IBLN 1N34N 5BR8N 4LFCN 1N32N 1N36N 4OX9N 4X65N 5LMNN 4DV0N
chains in the Genus database with same CATH superfamily
1XMQN 2UU9N 2UXDN 4LF7N 1FJGN 3OTON 4LF4N 4DV5N 4DV4N 5LMUN 2UUBN 2UXCN 4DV1N 4K0KN 2HHHN 4JI1N 3T1YN 4B3RN 2ZM6N 1HNZN 1N33N 4B3TN 1HR0N 4DV6N 4JI4N 5FLXd 4LF6N 4JI8N 4DR3N 2UUCN 4LF8N 4AQYN 4JYAN 4GKJN 4KHPN 1HNWN 1XNQN 4DR5N 4LF9N 5IT9d 3T1HN 4LFBN 4DV7N 4DR7N 4LF5N 4YHHN 2F4VN 4JI3N 3JAMd 3J80d 4B3MN 4DV3N 2E5LN 4JV5N 4DR6N 4DV2N 1XNRN 4JI6N 4DUYN 4DUZN 4NXMN 4B3SN 2UXBN 4X62N 5IWAN 1I94N 4DR1N 4JI2N 2UUAN 1XMON 4X66N 4DR2N 4DR4N 4GKKN 4JI0N 1HNXN 3J81d 4NXNN 3J7AT 4LFAN 1J5EN 4JI5N 2VQEN 1IBKN 1IBMN 4YY3N 5A2Qd 4JI7N 4X64N 2VQFN 1IBLN 1N34N 5BR8N 4LFCN 1N32N 1N36N 4OX9N 4X65N 5LMNN 4DV0N
chains in the Genus database with same CATH topology
1XMQN 2UU9N 2UXDN 4LF7N 1FJGN 3OTON 4LF4N 4DV5N 4DV4N 5LMUN 2UUBN 2UXCN 4DV1N 4K0KN 2HHHN 4JI1N 3T1YN 4B3RN 2ZM6N 1HNZN 1N33N 4B3TN 1HR0N 4DV6N 4JI4N 5FLXd 4LF6N 4JI8N 4DR3N 2UUCN 4LF8N 4AQYN 4JYAN 4GKJN 4KHPN 1HNWN 1XNQN 4DR5N 4LF9N 5IT9d 3T1HN 4LFBN 4DV7N 4DR7N 4LF5N 4YHHN 2F4VN 4JI3N 3JAMd 3J80d 4B3MN 4DV3N 2E5LN 4JV5N 4DR6N 4DV2N 1XNRN 4JI6N 4DUYN 4DUZN 4NXMN 4B3SN 2UXBN 4X62N 5IWAN 1I94N 4DR1N 4JI2N 2UUAN 1XMON 4X66N 4DR2N 4DR4N 4GKKN 4JI0N 1HNXN 3J81d 4NXNN 3J7AT 4LFAN 1J5EN 4JI5N 2VQEN 1IBKN 1IBMN 4YY3N 5A2Qd 4JI7N 4X64N 2VQFN 1IBLN 1N34N 5BR8N 4LFCN 1N32N 1N36N 4OX9N 4X65N 5LMNN 4DV0N
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XMQ N;  2UU9 N;  2UXD N;  4LF7 N;  1FJG N;  3OTO N;  4LF4 N;  4DV5 N;  4DV4 N;  5LMU N;  2UUB N;  2UXC N;  4DV1 N;  4K0K N;  2HHH N;  4JI1 N;  3T1Y N;  4B3R N;  2ZM6 N;  1HNZ N;  1N33 N;  4B3T N;  1HR0 N;  4DV6 N;  4JI4 N;  5FLX d;  4LF6 N;  4JI8 N;  4DR3 N;  2UUC N;  4LF8 N;  4AQY N;  4JYA N;  4GKJ N;  4KHP N;  1HNW N;  1XNQ N;  4DR5 N;  4LF9 N;  5IT9 d;  3T1H N;  4LFB N;  4DV7 N;  4DR7 N;  4LF5 N;  4YHH N;  2F4V N;  4JI3 N;  3JAM d;  3J80 d;  4B3M N;  4DV3 N;  2E5L N;  4JV5 N;  4DR6 N;  4DV2 N;  1XNR N;  4JI6 N;  4DUY N;  4DUZ N;  4NXM N;  4B3S N;  2UXB N;  4X62 N;  5IWA N;  1I94 N;  4DR1 N;  4JI2 N;  2UUA N;  1XMO N;  4X66 N;  4DR2 N;  4DR4 N;  4GKK N;  4JI0 N;  1HNX N;  3J81 d;  4NXN N;  3J7A T;  4LFA N;  1J5E N;  4JI5 N;  2VQE N;  1IBK N;  1IBM N;  4YY3 N;  5A2Q d;  4JI7 N;  4X64 N;  2VQF N;  1IBL N;  1N34 N;  5BR8 N;  4LFC N;  1N32 N;  1N36 N;  4OX9 N;  4X65 N;  5LMN N;  4DV0 N; 
#chains in the Genus database with same CATH topology
 1XMQ N;  2UU9 N;  2UXD N;  4LF7 N;  1FJG N;  3OTO N;  4LF4 N;  4DV5 N;  4DV4 N;  5LMU N;  2UUB N;  2UXC N;  4DV1 N;  4K0K N;  2HHH N;  4JI1 N;  3T1Y N;  4B3R N;  2ZM6 N;  1HNZ N;  1N33 N;  4B3T N;  1HR0 N;  4DV6 N;  4JI4 N;  5FLX d;  4LF6 N;  4JI8 N;  4DR3 N;  2UUC N;  4LF8 N;  4AQY N;  4JYA N;  4GKJ N;  4KHP N;  1HNW N;  1XNQ N;  4DR5 N;  4LF9 N;  5IT9 d;  3T1H N;  4LFB N;  4DV7 N;  4DR7 N;  4LF5 N;  4YHH N;  2F4V N;  4JI3 N;  3JAM d;  3J80 d;  4B3M N;  4DV3 N;  2E5L N;  4JV5 N;  4DR6 N;  4DV2 N;  1XNR N;  4JI6 N;  4DUY N;  4DUZ N;  4NXM N;  4B3S N;  2UXB N;  4X62 N;  5IWA N;  1I94 N;  4DR1 N;  4JI2 N;  2UUA N;  1XMO N;  4X66 N;  4DR2 N;  4DR4 N;  4GKK N;  4JI0 N;  1HNX N;  3J81 d;  4NXN N;  3J7A T;  4LFA N;  1J5E N;  4JI5 N;  2VQE N;  1IBK N;  1IBM N;  4YY3 N;  5A2Q d;  4JI7 N;  4X64 N;  2VQF N;  1IBL N;  1N34 N;  5BR8 N;  4LFC N;  1N32 N;  1N36 N;  4OX9 N;  4X65 N;  5LMN N;  4DV0 N; 
#chains in the Genus database with same CATH homology
 1XMQ N;  2UU9 N;  2UXD N;  4LF7 N;  1FJG N;  3OTO N;  4LF4 N;  4DV5 N;  4DV4 N;  5LMU N;  2UUB N;  2UXC N;  4DV1 N;  4K0K N;  2HHH N;  4JI1 N;  3T1Y N;  4B3R N;  2ZM6 N;  1HNZ N;  1N33 N;  4B3T N;  1HR0 N;  4DV6 N;  4JI4 N;  5FLX d;  4LF6 N;  4JI8 N;  4DR3 N;  2UUC N;  4LF8 N;  4AQY N;  4JYA N;  4GKJ N;  4KHP N;  1HNW N;  1XNQ N;  4DR5 N;  4LF9 N;  5IT9 d;  3T1H N;  4LFB N;  4DV7 N;  4DR7 N;  4LF5 N;  4YHH N;  2F4V N;  4JI3 N;  3JAM d;  3J80 d;  4B3M N;  4DV3 N;  2E5L N;  4JV5 N;  4DR6 N;  4DV2 N;  1XNR N;  4JI6 N;  4DUY N;  4DUZ N;  4NXM N;  4B3S N;  2UXB N;  4X62 N;  5IWA N;  1I94 N;  4DR1 N;  4JI2 N;  2UUA N;  1XMO N;  4X66 N;  4DR2 N;  4DR4 N;  4GKK N;  4JI0 N;  1HNX N;  3J81 d;  4NXN N;  3J7A T;  4LFA N;  1J5E N;  4JI5 N;  2VQE N;  1IBK N;  1IBM N;  4YY3 N;  5A2Q d;  4JI7 N;  4X64 N;  2VQF N;  1IBL N;  1N34 N;  5BR8 N;  4LFC N;  1N32 N;  1N36 N;  4OX9 N;  4X65 N;  5LMN N;  4DV0 N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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