The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
173
|
structure length |
173
|
Chain Sequence |
GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Towards a molecular understanding of phase separation in the lens: a comparison of the X-ray structures of two high Tc gamma-crystallins, gammaE and gammaF, with two low Tc gamma-crystallins, gammaB and gammaD.
pubmed doi rcsb |
| molecule keywords |
GAMMAE CRYSTALLIN
|
| molecule tags |
Eye lens protein
|
| total genus |
42
|
| structure length |
173
|
| sequence length |
173
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1998-02-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00030 | Crystall | Beta/Gamma crystallin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Gamma-B Crystallin; domain 1 | Crystallins | ||
| Mainly Beta | Sandwich | Gamma-B Crystallin; domain 1 | Crystallins |
#chains in the Genus database with same CATH superfamily 2JDG A; 2DAD A; 1M8U A; 1BD7 A; 1PRS A; 2M3C A; 4AKA A; 2B1O A; 2NBR A; 1A45 A; 4EL6 A; 1E7N A; 2KFB A; 3I9H A; 3HZ2 A; 3IAJ A; 1GCS A; 4GR7 A; 3SO1 A; 1YTQ A; 3SO0 A; 1AG4 A; 4NI3 A; 1YHP A; 1HA4 A; 1H4A X; 2M3T A; 1OKI A; 1ZIQ A; 2V2U A; 4IAU A; 4JGF A; 3QK3 A; 2BB2 A; 1ELP A; 2JDF A; 2KP5 A; 1GAM A; 4PSP A; 1A5D A; 3ENT A; 1ZIR A; 3LWK A; 4W9B A; 1HK0 X; 1BLB A; 1ZWO A; 2A5M A; 3SNZ A; 5HT9 A; 3ENU A; 3HZB A; 3CW3 A; 1DSL A; 2K1W A; 3SNY A; 1ZIE A; 1PRR A; 1ZGT A; 1ZWM A; 4PSR A; 4W9A A; 1HDF A; 4FD9 A; 1A7H A; 2M3U A; 2BV2 A; 1AMM A; 1NPS A; 1I5I A; 2K1X A; 4GCR A; 2G98 A; 5HT8 A; #chains in the Genus database with same CATH topology 1M8U A; 1BD7 A; 1PRS A; 1GH5 A; 3SO1 A; 1BHU A; 1YHP A; 4JGF A; 3QK3 A; 2BB2 A; 3LWK A; 1F53 A; 4W9B A; 1HK0 X; 1BLB A; 5HT9 A; 3ENU A; 3HZB A; 3CW3 A; 1PRR A; 1ZWM A; 1NPS A; 2K1X A; 4GCR A; 5HT8 A; 4AKA A; 1A45 A; 4NI3 A; 1H4A X; 2M3T A; 4PSP A; 2KP5 A; 1A5D A; 1C01 A; 3SNY A; 1ZIE A; 1HDF A; 2M3U A; 1I5I A; 2K1W A; 2G98 A; 2DAD A; 2B1O A; 4EL6 A; 1E7N A; 3I9H A; 3IAJ A; 4GR7 A; 3UJZ A; 1YTQ A; 1AG4 A; 1OKI A; 4IAU A; 2JDF A; 1ELP A; 1GAM A; 1ZIR A; 2A5M A; 3SNZ A; 1ZWO A; 1DSL A; 1G6E A; 1A7H A; 3ENT A; 2NBR A; 4W9A A; 2JDG A; 2M3C A; 2KFB A; 3HZ2 A; 1GCS A; 3SO0 A; 1WKT A; 1HA4 A; 1ZIQ A; 2V2U A; 1ZGT A; 4PSR A; 4FD9 A; 2BV2 A; 1AMM A; #chains in the Genus database with same CATH homology 2JDG A; 2DAD A; 1M8U A; 1BD7 A; 1PRS A; 2M3C A; 4AKA A; 2B1O A; 2NBR A; 1A45 A; 4EL6 A; 1E7N A; 2KFB A; 3I9H A; 3HZ2 A; 3IAJ A; 1GCS A; 4GR7 A; 3SO1 A; 1YTQ A; 3SO0 A; 1AG4 A; 4NI3 A; 1YHP A; 1HA4 A; 1H4A X; 2M3T A; 1OKI A; 1ZIQ A; 2V2U A; 4IAU A; 4JGF A; 3QK3 A; 2BB2 A; 1ELP A; 2JDF A; 2KP5 A; 1GAM A; 4PSP A; 1A5D A; 3ENT A; 1ZIR A; 3LWK A; 4W9B A; 1HK0 X; 1BLB A; 1ZWO A; 2A5M A; 3SNZ A; 5HT9 A; 3ENU A; 3HZB A; 3CW3 A; 1DSL A; 2K1W A; 3SNY A; 1ZIE A; 1PRR A; 1ZGT A; 1ZWM A; 4PSR A; 4W9A A; 1HDF A; 4FD9 A; 1A7H A; 2M3U A; 2BV2 A; 1AMM A; 1NPS A; 1I5I A; 2K1X A; 4GCR A; 2G98 A; 5HT8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
