1AG4A

Nmr structure of spherulin 3a (s3a) from physarum polycephalum, minimized average structure
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
103
structure length
103
Chain Sequence
MSVCKGVSGNPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKVGPNTKAFIFKDDRFNGNFIRLEESSQVTDLTTRNLNDAISSIIVATFESA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-5)S3 (28-31)TIV1 (12-15)TIV9 (54-57)EMPTYTIV2 (19-22)S5 (50-53)TIV4 (22-25)TIV3 (21-24)TVIII1 (80-83)S9 (93-99)S4 (34-36)TIV5 (35-38)S6 (57-63)TI1 (65-68)3H1 (84-86)S2 (16-19)TIV10 (89-92)S8 (78-80)S7 (72-74)Updating...
connected with : NaN
molecule tags Structural protein
source organism Physarum polycephalum
publication title Ca2+-loaded spherulin 3a from Physarum polycephalum adopts the prototype gamma-crystallin fold in aqueous solution.
pubmed doi rcsb
molecule keywords SPHERULIN 3A
total genus 10
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 1997-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08964 Crystall_3 Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1ag4A00
3SNYA 1DSLA 2K1XA 1H4AX 1PRRA 1ZGTA 1ZWMA 3ENTA 4PSRA 1A7HA 1ELPA 4JGFA 1M8UA 1AMMA 1PRSA 3I9HA 1AG4A 3SO1A 2M3CA 2DADA 3CW3A 1GCSA 4PSPA 3ENUA 3HZBA 1ZIRA 3LWKA 1HK0X 2KFBA 4AKAA 2V2UA 1I5IA 4FD9A 4W9BA 4EL6A 2M3UA 1HA4A 2BB2A 1ZWOA 4GCRA 5HT8A 2KP5A 3QK3A 1BLBA 3IAJA 4GR7A 2K1WA 1BD7A 4W9AA 2JDFA 1YHPA 1A45A 2M3TA 2NBRA 1NPSA 2JDGA 3SO0A 1ZIEA 1HDFA 2BV2A 4NI3A 3HZ2A 3SNZA 2B1OA 1A5DA 5HT9A 2A5MA 1YTQA 1E7NA 1OKIA 1ZIQA 2G98A 1GAMA 4IAUA
chains in the Genus database with same CATH superfamily
1DSLA 2K1XA 1ZGTA 4PSRA 1A7HA 1ELPA 2DADA 3CW3A 3ENUA 3LWKA 1HK0X 2KFBA 1I5IA 4W9BA 1BD7A 3UJZA 4NI3A 3SNZA 1BHUA 5HT9A 1OKIA 1GAMA 4IAUA 4JGFA 1M8UA 3HZBA 1ZIRA 2M3UA 1HA4A 3QK3A 1BLBA 3IAJA 1NPSA 1ZIEA 2BV2A 2B1OA 2G98A 1ZWMA 3ENTA 1C01A 1AMMA 2M3CA 1GCSA 4FD9A 2BB2A 1G6EA 5HT8A 1WKTA 4GR7A 2K1WA 4W9AA 1YHPA 1A45A 2NBRA 3SO0A 1HDFA 3HZ2A 1F53A 2A5MA 1YTQA 1E7NA 1ZIQA 3SNYA 1H4AX 1PRRA 1PRSA 3I9HA 1AG4A 3SO1A 4AKAA 2V2UA 4EL6A 1ZWOA 4GCRA 2KP5A 2JDFA 2M3TA 2JDGA 1GH5A 1A5DA 4PSPA
chains in the Genus database with same CATH topology
3SNYA 1DSLA 2K1XA 1H4AX 1PRRA 1ZGTA 1ZWMA 3ENTA 4PSRA 1A7HA 1ELPA 4JGFA 1M8UA 1AMMA 1PRSA 3I9HA 1AG4A 3SO1A 2M3CA 2DADA 3CW3A 1GCSA 4PSPA 3ENUA 3HZBA 1ZIRA 3LWKA 1HK0X 2KFBA 4AKAA 2V2UA 1I5IA 4FD9A 4W9BA 4EL6A 2M3UA 1HA4A 2BB2A 1ZWOA 4GCRA 5HT8A 2KP5A 3QK3A 1BLBA 3IAJA 4GR7A 2K1WA 1BD7A 4W9AA 2JDFA 1YHPA 1A45A 2M3TA 2NBRA 1NPSA 2JDGA 3SO0A 1ZIEA 1HDFA 2BV2A 4NI3A 3HZ2A 3SNZA 2B1OA 1A5DA 5HT9A 2A5MA 1YTQA 1E7NA 1OKIA 1ZIQA 2G98A 1GAMA 4IAUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SNY A;  1DSL A;  2K1X A;  1H4A X;  1PRR A;  1ZGT A;  1ZWM A;  3ENT A;  4PSR A;  1A7H A;  1ELP A;  4JGF A;  1M8U A;  1AMM A;  1PRS A;  3I9H A;  1AG4 A;  3SO1 A;  2M3C A;  2DAD A;  3CW3 A;  1GCS A;  4PSP A;  3ENU A;  3HZB A;  1ZIR A;  3LWK A;  1HK0 X;  2KFB A;  4AKA A;  2V2U A;  1I5I A;  4FD9 A;  4W9B A;  4EL6 A;  2M3U A;  1HA4 A;  2BB2 A;  1ZWO A;  4GCR A;  5HT8 A;  2KP5 A;  3QK3 A;  1BLB A;  3IAJ A;  4GR7 A;  2K1W A;  1BD7 A;  4W9A A;  2JDF A;  1YHP A;  1A45 A;  2M3T A;  2NBR A;  1NPS A;  2JDG A;  3SO0 A;  1ZIE A;  1HDF A;  2BV2 A;  4NI3 A;  3HZ2 A;  3SNZ A;  2B1O A;  1A5D A;  5HT9 A;  2A5M A;  1YTQ A;  1E7N A;  1OKI A;  1ZIQ A;  2G98 A;  1GAM A;  4IAU A; 
#chains in the Genus database with same CATH topology
 1DSL A;  2K1X A;  1ZGT A;  4PSR A;  1A7H A;  1ELP A;  2DAD A;  3CW3 A;  3ENU A;  3LWK A;  1HK0 X;  2KFB A;  1I5I A;  4W9B A;  1BD7 A;  3UJZ A;  4NI3 A;  3SNZ A;  1BHU A;  5HT9 A;  1OKI A;  1GAM A;  4IAU A;  4JGF A;  1M8U A;  3HZB A;  1ZIR A;  2M3U A;  1HA4 A;  3QK3 A;  1BLB A;  3IAJ A;  1NPS A;  1ZIE A;  2BV2 A;  2B1O A;  2G98 A;  1ZWM A;  3ENT A;  1C01 A;  1AMM A;  2M3C A;  1GCS A;  4FD9 A;  2BB2 A;  1G6E A;  5HT8 A;  1WKT A;  4GR7 A;  2K1W A;  4W9A A;  1YHP A;  1A45 A;  2NBR A;  3SO0 A;  1HDF A;  3HZ2 A;  1F53 A;  2A5M A;  1YTQ A;  1E7N A;  1ZIQ A;  3SNY A;  1H4A X;  1PRR A;  1PRS A;  3I9H A;  1AG4 A;  3SO1 A;  4AKA A;  2V2U A;  4EL6 A;  1ZWO A;  4GCR A;  2KP5 A;  2JDF A;  2M3T A;  2JDG A;  1GH5 A;  1A5D A;  4PSP A; 
#chains in the Genus database with same CATH homology
 3SNY A;  1DSL A;  2K1X A;  1H4A X;  1PRR A;  1ZGT A;  1ZWM A;  3ENT A;  4PSR A;  1A7H A;  1ELP A;  4JGF A;  1M8U A;  1AMM A;  1PRS A;  3I9H A;  1AG4 A;  3SO1 A;  2M3C A;  2DAD A;  3CW3 A;  1GCS A;  4PSP A;  3ENU A;  3HZB A;  1ZIR A;  3LWK A;  1HK0 X;  2KFB A;  4AKA A;  2V2U A;  1I5I A;  4FD9 A;  4W9B A;  4EL6 A;  2M3U A;  1HA4 A;  2BB2 A;  1ZWO A;  4GCR A;  5HT8 A;  2KP5 A;  3QK3 A;  1BLB A;  3IAJ A;  4GR7 A;  2K1W A;  1BD7 A;  4W9A A;  2JDF A;  1YHP A;  1A45 A;  2M3T A;  2NBR A;  1NPS A;  2JDG A;  3SO0 A;  1ZIE A;  1HDF A;  2BV2 A;  4NI3 A;  3HZ2 A;  3SNZ A;  2B1O A;  1A5D A;  5HT9 A;  2A5M A;  1YTQ A;  1E7N A;  1OKI A;  1ZIQ A;  2G98 A;  1GAM A;  4IAU A; 
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