1B9X | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	68
structure length	68
Chain Sequence	MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 68 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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68 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	A molecular mechanism for the phosphorylation-dependent regulation of heterotrimeric G proteins by phosducin. pubmed doi rcsb
molecule keywords	PROTEIN (TRANSDUCIN)
molecule tags	Signaling protein
source organism	Rattus norvegicus
total genus	18
structure length	68
sequence length	68
ec nomenclature
pdb deposition date	1999-02-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	1b9xB00

3SN6G 1GG2G 5HE2G 3PVWG 5TDHG 3KRWG 2PBIA 1A0RG 1XHMB 3CIKG 5KDOG 1B9XB 1OMWG 1GOTG 1GP2G 4KFMG 3AH8G 1B9YB 3KRXG 5HE3G 5HE1G 3PVUG 1TBGE 4PNKG 2TRCG 4MK0G 2BCJG 3V5WG 5HE0G 3PSCG
chains in the Genus database with same CATH superfamily

3SN6G 1GG2G 5HE2G 3PVWG 5TDHG 3KRWG 2PBIA 1A0RG 1XHMB 3CIKG 5KDOG 1B9XB 1OMWG 1GOTG 1GP2G 4KFMG 3AH8G 1B9YB 3KRXG 5HE3G 5HE1G 1IOJA 3PVUG 1TBGE 4PNKG 2TRCG 4MK0G 2BCJG 3V5WG 1HFES 5HE0G 3PSCG
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3SN6 G;  1GG2 G;  5HE2 G;  3PVW G;  5TDH G;  3KRW G;  2PBI A;  1A0R G;  1XHM B;  3CIK G;  5KDO G;  1B9X B;  1OMW G;  1GOT G;  1GP2 G;  4KFM G;  3AH8 G;  1B9Y B;  3KRX G;  5HE3 G;  5HE1 G;  3PVU G;  1TBG E;  4PNK G;  2TRC G;  4MK0 G;  2BCJ G;  3V5W G;  5HE0 G;  3PSC G; 
#chains in the Genus database with same CATH topology
 3SN6 G;  1GG2 G;  5HE2 G;  3PVW G;  5TDH G;  3KRW G;  2PBI A;  1A0R G;  1XHM B;  3CIK G;  5KDO G;  1B9X B;  1OMW G;  1GOT G;  1GP2 G;  4KFM G;  3AH8 G;  1B9Y B;  3KRX G;  5HE3 G;  5HE1 G;  1IOJ A;  3PVU G;  1TBG E;  4PNK G;  2TRC G;  4MK0 G;  2BCJ G;  3V5W G;  1HFE S;  5HE0 G;  3PSC G; 
#chains in the Genus database with same CATH homology
 3SN6 G;  1GG2 G;  5HE2 G;  3PVW G;  5TDH G;  3KRW G;  2PBI A;  1A0R G;  1XHM B;  3CIK G;  5KDO G;  1B9X B;  1OMW G;  1GOT G;  1GP2 G;  4KFM G;  3AH8 G;  1B9Y B;  3KRX G;  5HE3 G;  5HE1 G;  3PVU G;  1TBG E;  4PNK G;  2TRC G;  4MK0 G;  2BCJ G;  3V5W G;  5HE0 G;  3PSC G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1B9XB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization