1BD7A

Circularly permuted bb2-crystallin
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
176
structure length
176
Chain Sequence
EHKIILYENPNFTGKKMEIVDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDNSDFGAPHPQVQSVRRIRDMQGNPKIIIFEQENFQGHSHELSGPCPNLKETGMEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S8 (2-8)TVIII5 (37-40)S10 (34-39)TIV5 (8-11)3H4 (65-67)EMPTYS9 (12-18)3H3 (25-28)S12 (51-57)S14 (77-79)S11 (42-47)S13 (60-62)TII1 (47-50)TVIII3 (159-162)S5 (140-146)S6 (149-151)S1 (89-95)TVIII1 (109-112)S3 (123-128)S2 (99-106)TIV1 (95-98)3H1 (112-116)S7 (166-170)3H2 (154-157)TVIII2 (151-154)S4 (130-136)TIV2 (105-107)TIV3 (136-139)TVIII4 (22-25)TVIII6 (69-71)Updating...
connected with : NaN
molecule tags Eye-lens protein
source organism Rattus norvegicus
publication title Circular permutation of betaB2-crystallin changes the hierarchy of domain assembly.
pubmed rcsb
molecule keywords CIRCULARLY PERMUTED BB2-CRYSTALLIN
total genus 44
structure length 176
sequence length 176
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1bd7A01
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1bd7A02
1M8UA 2BB2A 2M3TA 1A5DA 1ZIQA 3I9HA 2NBRA 1AG4A 1ZIEA 1ZWMA 1ELPA 1ZWOA 2DADA 1H4AX 1PRRA 2G98A 3LWKA 4W9BA 4PSRA 4EL6A 4AKAA 4GR7A 4NI3A 1ZIRA 1DSLA 1BD7A 2B1OA 4GCRA 3ENUA 1OKIA 3SNYA 4IAUA 1I5IA 1YTQA 3ENTA 3QK3A 3SNZA 4PSPA 3IAJA 2K1XA 2M3UA 3HZ2A 1GAMA 1E7NA 2KP5A 3CW3A 3HZBA 1PRSA 1HK0X 1YHPA 3SO1A 2BV2A 4JGFA 1A7HA 1ZGTA 2JDGA 1HA4A 2KFBA 2V2UA 4W9AA 3SO0A 1AMMA 2M3CA 1HDFA 2JDFA 5HT8A 5HT9A 1A45A 2K1WA 1GCSA 4FD9A 2A5MA 1BLBA 1NPSA
chains in the Genus database with same CATH superfamily
1A5DA 1WKTA 2G98A 3LWKA 1PRRA 4GCRA 3SNYA 1YTQA 2M3UA 3HZ2A 3CW3A 1PRSA 2BV2A 1ZGTA 3SO0A 2M3CA 5HT8A 1G6EA 1BLBA 1NPSA 2BB2A 2M3TA 2NBRA 4W9BA 4PSRA 4GR7A 4NI3A 1ZIRA 1BD7A 1OKIA 3UJZA 1I5IA 3QK3A 3IAJA 2K1XA 1E7NA 2KP5A 1HK0X 2JDGA 2KFBA 2V2UA 4W9AA 1AMMA 1A45A 5HT9A 1ZIQA 1AG4A 1ZWOA 1ELPA 1H4AX 4EL6A 1DSLA 2B1OA 4IAUA 3ENTA 3SNZA 4PSPA 1BHUA 3SO1A 4JGFA 1A7HA 1C01A 1HDFA 2JDFA 1M8UA 3I9HA 1ZIEA 1ZWMA 2DADA 4AKAA 3ENUA 1GH5A 1GAMA 3HZBA 1YHPA 1HA4A 1F53A 2K1WA 4FD9A 1GCSA 2A5MA
chains in the Genus database with same CATH topology
1M8UA 2BB2A 2M3TA 1A5DA 1ZIQA 3I9HA 2NBRA 1AG4A 1ZIEA 1ZWMA 1ELPA 1ZWOA 2DADA 1H4AX 1PRRA 2G98A 3LWKA 4W9BA 4PSRA 4EL6A 4AKAA 4GR7A 4NI3A 1ZIRA 1DSLA 1BD7A 2B1OA 4GCRA 3ENUA 1OKIA 3SNYA 4IAUA 1I5IA 1YTQA 3ENTA 3QK3A 3SNZA 4PSPA 3IAJA 2K1XA 2M3UA 3HZ2A 1GAMA 1E7NA 2KP5A 3CW3A 3HZBA 1PRSA 1HK0X 1YHPA 3SO1A 2BV2A 4JGFA 1A7HA 1ZGTA 2JDGA 1HA4A 2KFBA 2V2UA 4W9AA 3SO0A 1AMMA 2M3CA 1HDFA 2JDFA 5HT8A 5HT9A 1A45A 2K1WA 1GCSA 4FD9A 2A5MA 1BLBA 1NPSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M8U A;  2BB2 A;  2M3T A;  1A5D A;  1ZIQ A;  3I9H A;  2NBR A;  1AG4 A;  1ZIE A;  1ZWM A;  1ELP A;  1ZWO A;  2DAD A;  1H4A X;  1PRR A;  2G98 A;  3LWK A;  4W9B A;  4PSR A;  4EL6 A;  4AKA A;  4GR7 A;  4NI3 A;  1ZIR A;  1DSL A;  1BD7 A;  2B1O A;  4GCR A;  3ENU A;  1OKI A;  3SNY A;  4IAU A;  1I5I A;  1YTQ A;  3ENT A;  3QK3 A;  3SNZ A;  4PSP A;  3IAJ A;  2K1X A;  2M3U A;  3HZ2 A;  1GAM A;  1E7N A;  2KP5 A;  3CW3 A;  3HZB A;  1PRS A;  1HK0 X;  1YHP A;  3SO1 A;  2BV2 A;  4JGF A;  1A7H A;  1ZGT A;  2JDG A;  1HA4 A;  2KFB A;  2V2U A;  4W9A A;  3SO0 A;  1AMM A;  2M3C A;  1HDF A;  2JDF A;  5HT8 A;  5HT9 A;  1A45 A;  2K1W A;  1GCS A;  4FD9 A;  2A5M A;  1BLB A;  1NPS A; 
#chains in the Genus database with same CATH topology
 1A5D A;  1WKT A;  2G98 A;  3LWK A;  1PRR A;  4GCR A;  3SNY A;  1YTQ A;  2M3U A;  3HZ2 A;  3CW3 A;  1PRS A;  2BV2 A;  1ZGT A;  3SO0 A;  2M3C A;  5HT8 A;  1G6E A;  1BLB A;  1NPS A;  2BB2 A;  2M3T A;  2NBR A;  4W9B A;  4PSR A;  4GR7 A;  4NI3 A;  1ZIR A;  1BD7 A;  1OKI A;  3UJZ A;  1I5I A;  3QK3 A;  3IAJ A;  2K1X A;  1E7N A;  2KP5 A;  1HK0 X;  2JDG A;  2KFB A;  2V2U A;  4W9A A;  1AMM A;  1A45 A;  5HT9 A;  1ZIQ A;  1AG4 A;  1ZWO A;  1ELP A;  1H4A X;  4EL6 A;  1DSL A;  2B1O A;  4IAU A;  3ENT A;  3SNZ A;  4PSP A;  1BHU A;  3SO1 A;  4JGF A;  1A7H A;  1C01 A;  1HDF A;  2JDF A;  1M8U A;  3I9H A;  1ZIE A;  1ZWM A;  2DAD A;  4AKA A;  3ENU A;  1GH5 A;  1GAM A;  3HZB A;  1YHP A;  1HA4 A;  1F53 A;  2K1W A;  4FD9 A;  1GCS A;  2A5M A; 
#chains in the Genus database with same CATH homology
 1M8U A;  2BB2 A;  2M3T A;  1A5D A;  1ZIQ A;  3I9H A;  2NBR A;  1AG4 A;  1ZIE A;  1ZWM A;  1ELP A;  1ZWO A;  2DAD A;  1H4A X;  1PRR A;  2G98 A;  3LWK A;  4W9B A;  4PSR A;  4EL6 A;  4AKA A;  4GR7 A;  4NI3 A;  1ZIR A;  1DSL A;  1BD7 A;  2B1O A;  4GCR A;  3ENU A;  1OKI A;  3SNY A;  4IAU A;  1I5I A;  1YTQ A;  3ENT A;  3QK3 A;  3SNZ A;  4PSP A;  3IAJ A;  2K1X A;  2M3U A;  3HZ2 A;  1GAM A;  1E7N A;  2KP5 A;  3CW3 A;  3HZB A;  1PRS A;  1HK0 X;  1YHP A;  3SO1 A;  2BV2 A;  4JGF A;  1A7H A;  1ZGT A;  2JDG A;  1HA4 A;  2KFB A;  2V2U A;  4W9A A;  3SO0 A;  1AMM A;  2M3C A;  1HDF A;  2JDF A;  5HT8 A;  5HT9 A;  1A45 A;  2K1W A;  1GCS A;  4FD9 A;  2A5M A;  1BLB A;  1NPS A; 
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