1C01 | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	76
structure length	76
Chain Sequence	SAFTVWSGPGCNNRAERYSKCGCSAIHQKGGYDFSYTGQTAALYNQAGCSGVAHTRFGSSARACNPFGWKSIFIQC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 76 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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76 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antimicrobial protein
publication title	MiAMP1, a novel protein from Macadamia integrifolia adopts a Greek key beta-barrel fold unique amongst plant antimicrobial proteins. pubmed doi rcsb
molecule keywords	ANTIMICROBIAL PEPTIDE 1
total genus	7
structure length	76
sequence length	76
ec nomenclature
pdb deposition date	1999-07-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09117	MiAMP1	MiAMP1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.30	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Gamma-B Crystallin; domain 1	1c01A00

1F53A 1C01A 1BHUA 1G6EA 1GH5A
chains in the Genus database with same CATH superfamily

1ZIRA 1I5IA 4EL6A 2NBRA 2BB2A 4AKAA 2BV2A 1NPSA 1ZIEA 4NI3A 4GCRA 2JDGA 2M3TA 1HK0X 1GH5A 3QK3A 2A5MA 3UJZA 1A5DA 1ELPA 3SNYA 2M3CA 4PSRA 1ZGTA 2M3UA 5HT8A 2G98A 4GR7A 5HT9A 1A45A 4FD9A 1ZWOA 1HDFA 1DSLA 1GCSA 1AMMA 2KP5A 1OKIA 2B1OA 3HZ2A 2DADA 3HZBA 1M8UA 4W9BA 4IAUA 1G6EA 4PSPA 3I9HA 3SNZA 1GAMA 3SO0A 1BHUA 4W9AA 1YHPA 1AG4A 2KFBA 2V2UA 1PRSA 4JGFA 1E7NA 1WKTA 2K1XA 2K1WA 1PRRA 1ZWMA 1H4AX 3SO1A 3IAJA 1A7HA 3ENUA 1YTQA 1BLBA 1BD7A 1F53A 1HA4A 1C01A 2JDFA 1ZIQA 3CW3A 3LWKA 3ENTA
chains in the Genus database with same CATH topology

1F53A 3UJZA 1C01A 1BHUA 1G6EA 1WKTA 1GH5A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1F53 A;  1C01 A;  1BHU A;  1G6E A;  1GH5 A; 
#chains in the Genus database with same CATH topology
 1ZIR A;  1I5I A;  4EL6 A;  2NBR A;  2BB2 A;  4AKA A;  2BV2 A;  1NPS A;  1ZIE A;  4NI3 A;  4GCR A;  2JDG A;  2M3T A;  1HK0 X;  1GH5 A;  3QK3 A;  2A5M A;  3UJZ A;  1A5D A;  1ELP A;  3SNY A;  2M3C A;  4PSR A;  1ZGT A;  2M3U A;  5HT8 A;  2G98 A;  4GR7 A;  5HT9 A;  1A45 A;  4FD9 A;  1ZWO A;  1HDF A;  1DSL A;  1GCS A;  1AMM A;  2KP5 A;  1OKI A;  2B1O A;  3HZ2 A;  2DAD A;  3HZB A;  1M8U A;  4W9B A;  4IAU A;  1G6E A;  4PSP A;  3I9H A;  3SNZ A;  1GAM A;  3SO0 A;  1BHU A;  4W9A A;  1YHP A;  1AG4 A;  2KFB A;  2V2U A;  1PRS A;  4JGF A;  1E7N A;  1WKT A;  2K1X A;  2K1W A;  1PRR A;  1ZWM A;  1H4A X;  3SO1 A;  3IAJ A;  1A7H A;  3ENU A;  1YTQ A;  1BLB A;  1BD7 A;  1F53 A;  1HA4 A;  1C01 A;  2JDF A;  1ZIQ A;  3CW3 A;  3LWK A;  3ENT A; 
#chains in the Genus database with same CATH homology
 1F53 A;  3UJZ A;  1C01 A;  1BHU A;  1G6E A;  1WKT A;  1GH5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1C01A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations