1C3K | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	143
structure length	143
Chain Sequence	DIAVQAGPWGGNGGKRWLQTAHGGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGDKAETITFAEDEDITAISGTFGAYYHMTVVTSLTFQTNKKVYGPFGTVASSSFSLPLTKGKFAGFFGNSGDVLDSIGGVVVP

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__243951450537934__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__243951450537934__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1C3K/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__243951450537934__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"243951450537934","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1C3K/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__243951450537934__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Helianthus tuberosus lectin reveals a widespread scaffold for mannose-binding lectins. pubmed doi rcsb
molecule keywords	AGGLUTININ
total genus	28
structure length	143
sequence length	143
ec nomenclature
pdb deposition date	1999-07-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1c3kA00

1OUWA 1WS4C 4AK4A 1UH1A 1ZGRA 2GUCA 4AKBA 1JOTA 1C3KA 1XXQA 3WOCA 3LLZA 4AKCA 4DDNA 3MIVA 2HYRA 2BN0A 4R6QA 1C3MA 1UH0A 3VZGA 3LL2A 5EXGA 3APAA 5JM1A 5BN6E 5J50A 2HYQA 1JACA 4MQ0A 3R52A 3LLYA 3R51A 1KUJA 4PIKA 1UGYA 2GUXA 1X1VA 1XXRA 3LL0A 4PITA 1TOQA 3VZEA 4AKDA 3R50A 1M26A 3VZFA 1KU8A 1J4SA 4R6PA 1UGYC 1UGXA 2BMZA 2BMYA 1WS5A 1C3NA 2GUDA 2GUEA 5J4XA 5J51A 3MIUA 3P8SA 4PIFA 2JZ4A 4GX7A 1J4TA 3O44A 1VBOA 4R6NA 1WS5C 3VY6A 3LKYA 2GTYA 4WOGA 1ZGSA 4R6OA 3LM1A 1XEZA 5J4TA 5AV7A 1WS4A 1UGWC 1J4UA 2NUOA 2NU5A 3MITA 3WOBA 3LL1A 4R6RA 3VY7A 3AQGA 4PIUA 1VBPA 1UGWA 1PXDA 1TP8A
chains in the Genus database with same CATH superfamily

1OUWA 1WS4C 4AK4A 1UH1A 1ZGRA 2GUCA 4AKBA 1JOTA 3EB7A 1C3KA 1XXQA 3WOCA 3LLZA 4AKCA 4DDNA 3MIVA 2HYRA 2BN0A 4R6QA 1C3MA 1UH0A 3VZGA 3LL2A 5EXGA 3APAA 4W8JA 5JM1A 1VMOA 5BN6E 5J50A 2HYQA 1JACA 4MQ0A 3R52A 1W99A 3LLYA 3R51A 1CIYA 1KUJA 4PIKA 1UGYA 2GUXA 1X1VA 1XXRA 4QX3A 3LL0A 4PITA 1TOQA 3VZEA 2QP2A 4AKDA 3R50A 1M26A 3VZFA 1KU8A 1J4SA 4R6PA 1UGYC 1UGXA 4QX1A 2BMZA 2BMYA 1WS5A 1C3NA 2GUDA 2GUEA 5J4XA 4D8MA 5J51A 3MIUA 3P8SA 4PIFA 2JZ4A 4GX7A 1DLCA 4ARXA 1J4TA 3O44A 4QX2A 1VBOA 2C9KA 4MOAA 4R6NA 1WS5C 3VY6A 3LKYA 2GTYA 4WOGA 1ZGSA 4R6OA 3LM1A 1JI6A 1XEZA 4ARYA 5J4TA 5AV7A 1WS4A 1I5PA 1UGWC 1J4UA 2NUOA 2NU5A 3MITA 4QX0A 3WOBA 3LL1A 4R6RA 3VY7A 3AQGA 4PIUA 1VBPA 1UGWA 1PXDA 3TOWA 1TP8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1OUW A;  1WS4 C;  4AK4 A;  1UH1 A;  1ZGR A;  2GUC A;  4AKB A;  1JOT A;  1C3K A;  1XXQ A;  3WOC A;  3LLZ A;  4AKC A;  4DDN A;  3MIV A;  2HYR A;  2BN0 A;  4R6Q A;  1C3M A;  1UH0 A;  3VZG A;  3LL2 A;  5EXG A;  3APA A;  5JM1 A;  5BN6 E;  5J50 A;  2HYQ A;  1JAC A;  4MQ0 A;  3R52 A;  3LLY A;  3R51 A;  1KUJ A;  4PIK A;  1UGY A;  2GUX A;  1X1V A;  1XXR A;  3LL0 A;  4PIT A;  1TOQ A;  3VZE A;  4AKD A;  3R50 A;  1M26 A;  3VZF A;  1KU8 A;  1J4S A;  4R6P A;  1UGY C;  1UGX A;  2BMZ A;  2BMY A;  1WS5 A;  1C3N A;  2GUD A;  2GUE A;  5J4X A;  5J51 A;  3MIU A;  3P8S A;  4PIF A;  2JZ4 A;  4GX7 A;  1J4T A;  3O44 A;  1VBO A;  4R6N A;  1WS5 C;  3VY6 A;  3LKY A;  2GTY A;  4WOG A;  1ZGS A;  4R6O A;  3LM1 A;  1XEZ A;  5J4T A;  5AV7 A;  1WS4 A;  1UGW C;  1J4U A;  2NUO A;  2NU5 A;  3MIT A;  3WOB A;  3LL1 A;  4R6R A;  3VY7 A;  3AQG A;  4PIU A;  1VBP A;  1UGW A;  1PXD A;  1TP8 A; 
#chains in the Genus database with same CATH topology
 1OUW A;  1WS4 C;  4AK4 A;  1UH1 A;  1ZGR A;  2GUC A;  4AKB A;  1JOT A;  3EB7 A;  1C3K A;  1XXQ A;  3WOC A;  3LLZ A;  4AKC A;  4DDN A;  3MIV A;  2HYR A;  2BN0 A;  4R6Q A;  1C3M A;  1UH0 A;  3VZG A;  3LL2 A;  5EXG A;  3APA A;  4W8J A;  5JM1 A;  1VMO A;  5BN6 E;  5J50 A;  2HYQ A;  1JAC A;  4MQ0 A;  3R52 A;  1W99 A;  3LLY A;  3R51 A;  1CIY A;  1KUJ A;  4PIK A;  1UGY A;  2GUX A;  1X1V A;  1XXR A;  4QX3 A;  3LL0 A;  4PIT A;  1TOQ A;  3VZE A;  2QP2 A;  4AKD A;  3R50 A;  1M26 A;  3VZF A;  1KU8 A;  1J4S A;  4R6P A;  1UGY C;  1UGX A;  4QX1 A;  2BMZ A;  2BMY A;  1WS5 A;  1C3N A;  2GUD A;  2GUE A;  5J4X A;  4D8M A;  5J51 A;  3MIU A;  3P8S A;  4PIF A;  2JZ4 A;  4GX7 A;  1DLC A;  4ARX A;  1J4T A;  3O44 A;  4QX2 A;  1VBO A;  2C9K A;  4MOA A;  4R6N A;  1WS5 C;  3VY6 A;  3LKY A;  2GTY A;  4WOG A;  1ZGS A;  4R6O A;  3LM1 A;  1JI6 A;  1XEZ A;  4ARY A;  5J4T A;  5AV7 A;  1WS4 A;  1I5P A;  1UGW C;  1J4U A;  2NUO A;  2NU5 A;  3MIT A;  4QX0 A;  3WOB A;  3LL1 A;  4R6R A;  3VY7 A;  3AQG A;  4PIU A;  1VBP A;  1UGW A;  1PXD A;  3TOW A;  1TP8 A; 
#chains in the Genus database with same CATH homology
 1OUW A;  1WS4 C;  4AK4 A;  1UH1 A;  1ZGR A;  2GUC A;  4AKB A;  1JOT A;  1C3K A;  1XXQ A;  3WOC A;  3LLZ A;  4AKC A;  4DDN A;  3MIV A;  2HYR A;  2BN0 A;  4R6Q A;  1C3M A;  1UH0 A;  3VZG A;  3LL2 A;  5EXG A;  3APA A;  5JM1 A;  5BN6 E;  5J50 A;  2HYQ A;  1JAC A;  4MQ0 A;  3R52 A;  3LLY A;  3R51 A;  1KUJ A;  4PIK A;  1UGY A;  2GUX A;  1X1V A;  1XXR A;  3LL0 A;  4PIT A;  1TOQ A;  3VZE A;  4AKD A;  3R50 A;  1M26 A;  3VZF A;  1KU8 A;  1J4S A;  4R6P A;  1UGY C;  1UGX A;  2BMZ A;  2BMY A;  1WS5 A;  1C3N A;  2GUD A;  2GUE A;  5J4X A;  5J51 A;  3MIU A;  3P8S A;  4PIF A;  2JZ4 A;  4GX7 A;  1J4T A;  3O44 A;  1VBO A;  4R6N A;  1WS5 C;  3VY6 A;  3LKY A;  2GTY A;  4WOG A;  1ZGS A;  4R6O A;  3LM1 A;  1XEZ A;  5J4T A;  5AV7 A;  1WS4 A;  1UGW C;  1J4U A;  2NUO A;  2NU5 A;  3MIT A;  3WOB A;  3LL1 A;  4R6R A;  3VY7 A;  3AQG A;  4PIU A;  1VBP A;  1UGW A;  1PXD A;  1TP8 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1C3KA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations