1DS7A

A minor fmn-dependent nitroreductase from escherichia coli b
Total Genus 73

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
217
structure length
217
Chain Sequence
MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (17-20)TVIII1 (18-21)TVIII2 (78-81)AH2 (24-36)AH7 (135-157)O1 (44-46)3H1 (40-42)AH6 (111-130)S1 (46-51)S2 (80-87)AH3 (54-62)AH8 (169-176)TIV1 (62-65)TII'1 (65-68)3H2 (69-71)O2 (165-167)AH4 (72-77)S3 (160-161)S4 (183-192)TI4 (195-198)3H4 (199-201)AH5 (92-105)TI3 (130-133)3H3 (179-181)AH9 (210-213)AH1 (3-9)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Escherichia coli
publication title Crystal structure of FMN-dependent nitroreductase from Escherichia coli B: a prodrug-activating enzyme.
pubmed doi rcsb
molecule keywords FMN-DEPENDENT NITROREDUCTASE
total genus 73
structure length 217
sequence length 217
chains with identical sequence B
ec nomenclature ec 1.5.1.34: 6,7-dihydropteridine reductase.
pdb deposition date 2000-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1ds7A00
1KQBA 3TNZA 2WZVA 5KO7A 1ICVA 4BN8A 1F5VA 1YLRA 1NECA 1VKWA 2I7HA 4TTCA 3GFAA 3HZNA 2YMVA 1ICUA 4URPA 3E39A 4XOOA 1OO6A 4G8SA 5HDJA 3N2SA 1ZCHA 1YKIA 1YLUA 3EO7A 3GAGA 2WZWA 3M5KA 5KRDA 3GB5A 1DS7A 3X22A 3KWKA 2BKJA 3QDLA 2H0UA 3OF4A 4BN6A 3E10A 4XOQA 2ISLA 3GH8A 2IFAA 1KQDA 1V5YA 1KQCA 4XOMA 1OO5A 3GBHA 1NOXA 1BKJA 3GE5A 2ISJA 4QLXA 2FREA 4BN7A 2ISKA 1V5ZA 1ICRA 5HEIA 4BNBA 3EO8A 3GFDA 3HOIA 4QLYA 1OONA 4BN9A 4EO3A 3EOFA 3EK3A 3BEMA 3H4OA 3TO0A 5KO8A 2R01A 1OOQA 2WQFA 3K6HA 3G14A 3GR3A 1IDTA 1VFRA 3BM1A 2HAYA 5J6CA 4DN2A 3KOQA 4TTBA 3PXVA 1YWQA 3X21A 2B67A 3GE6A 3BM2A 3HJ9A
chains in the Genus database with same CATH superfamily
1KQBA 3TNZA 2WZVA 5KO7A 1ICVA 4BN8A 1F5VA 1YLRA 1NECA 1VKWA 2I7HA 4TTCA 3GFAA 3HZNA 2YMVA 1ICUA 4URPA 3E39A 4XOOA 1OO6A 4G8SA 5HDJA 3N2SA 1ZCHA 1YKIA 1YLUA 3EO7A 3GAGA 2WZWA 3M5KA 5KRDA 3GB5A 1DS7A 3X22A 3KWKA 2BKJA 3QDLA 2H0UA 3OF4A 4BN6A 3E10A 4XOQA 2ISLA 3GH8A 2IFAA 1KQDA 1V5YA 1KQCA 4XOMA 1OO5A 3GBHA 1NOXA 1BKJA 3GE5A 2ISJA 4QLXA 2FREA 4BN7A 2ISKA 1V5ZA 1ICRA 5HEIA 4BNBA 3EO8A 3GFDA 3HOIA 4QLYA 1OONA 4BN9A 4EO3A 3EOFA 1J6RA 3EK3A 3BEMA 3H4OA 3TO0A 5KO8A 2R01A 1OOQA 2WQFA 3K6HA 3G14A 3GR3A 1IDTA 1VFRA 3BM1A 2HAYA 5J6CA 4DN2A 3KOQA 4TTBA 3PXVA 1YWQA 3X21A 2B67A 3GE6A 3BM2A 3HJ9A
chains in the Genus database with same CATH topology
1KQBA 3TNZA 2WZVA 5KO7A 1ICVA 4BN8A 1F5VA 1YLRA 1NECA 1VKWA 2I7HA 4TTCA 3GFAA 3HZNA 2YMVA 1ICUA 4URPA 3E39A 4XOOA 1OO6A 4G8SA 5HDJA 3N2SA 1ZCHA 1YKIA 1YLUA 3EO7A 3GAGA 2WZWA 3M5KA 5KRDA 3GB5A 1DS7A 3X22A 3KWKA 2BKJA 3QDLA 2H0UA 3OF4A 4BN6A 3E10A 4XOQA 2ISLA 3GH8A 2IFAA 1KQDA 1V5YA 1KQCA 4XOMA 1OO5A 3GBHA 1NOXA 1BKJA 3GE5A 2ISJA 4QLXA 2FREA 4BN7A 2ISKA 1V5ZA 1ICRA 5HEIA 4BNBA 3EO8A 3GFDA 3HOIA 4QLYA 1OONA 4BN9A 4EO3A 3EOFA 1J6RA 3EK3A 3BEMA 3H4OA 3TO0A 5KO8A 2R01A 1OOQA 2WQFA 3K6HA 3G14A 3GR3A 1IDTA 1VFRA 3BM1A 2HAYA 5J6CA 4DN2A 3KOQA 4TTBA 3PXVA 1YWQA 3X21A 2B67A 3GE6A 3BM2A 3HJ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KQB A;  3TNZ A;  2WZV A;  5KO7 A;  1ICV A;  4BN8 A;  1F5V A;  1YLR A;  1NEC A;  1VKW A;  2I7H A;  4TTC A;  3GFA A;  3HZN A;  2YMV A;  1ICU A;  4URP A;  3E39 A;  4XOO A;  1OO6 A;  4G8S A;  5HDJ A;  3N2S A;  1ZCH A;  1YKI A;  1YLU A;  3EO7 A;  3GAG A;  2WZW A;  3M5K A;  5KRD A;  3GB5 A;  1DS7 A;  3X22 A;  3KWK A;  2BKJ A;  3QDL A;  2H0U A;  3OF4 A;  4BN6 A;  3E10 A;  4XOQ A;  2ISL A;  3GH8 A;  2IFA A;  1KQD A;  1V5Y A;  1KQC A;  4XOM A;  1OO5 A;  3GBH A;  1NOX A;  1BKJ A;  3GE5 A;  2ISJ A;  4QLX A;  2FRE A;  4BN7 A;  2ISK A;  1V5Z A;  1ICR A;  5HEI A;  4BNB A;  3EO8 A;  3GFD A;  3HOI A;  4QLY A;  1OON A;  4BN9 A;  4EO3 A;  3EOF A;  3EK3 A;  3BEM A;  3H4O A;  3TO0 A;  5KO8 A;  2R01 A;  1OOQ A;  2WQF A;  3K6H A;  3G14 A;  3GR3 A;  1IDT A;  1VFR A;  3BM1 A;  2HAY A;  5J6C A;  4DN2 A;  3KOQ A;  4TTB A;  3PXV A;  1YWQ A;  3X21 A;  2B67 A;  3GE6 A;  3BM2 A;  3HJ9 A; 
#chains in the Genus database with same CATH topology
 1KQB A;  3TNZ A;  2WZV A;  5KO7 A;  1ICV A;  4BN8 A;  1F5V A;  1YLR A;  1NEC A;  1VKW A;  2I7H A;  4TTC A;  3GFA A;  3HZN A;  2YMV A;  1ICU A;  4URP A;  3E39 A;  4XOO A;  1OO6 A;  4G8S A;  5HDJ A;  3N2S A;  1ZCH A;  1YKI A;  1YLU A;  3EO7 A;  3GAG A;  2WZW A;  3M5K A;  5KRD A;  3GB5 A;  1DS7 A;  3X22 A;  3KWK A;  2BKJ A;  3QDL A;  2H0U A;  3OF4 A;  4BN6 A;  3E10 A;  4XOQ A;  2ISL A;  3GH8 A;  2IFA A;  1KQD A;  1V5Y A;  1KQC A;  4XOM A;  1OO5 A;  3GBH A;  1NOX A;  1BKJ A;  3GE5 A;  2ISJ A;  4QLX A;  2FRE A;  4BN7 A;  2ISK A;  1V5Z A;  1ICR A;  5HEI A;  4BNB A;  3EO8 A;  3GFD A;  3HOI A;  4QLY A;  1OON A;  4BN9 A;  4EO3 A;  3EOF A;  1J6R A;  3EK3 A;  3BEM A;  3H4O A;  3TO0 A;  5KO8 A;  2R01 A;  1OOQ A;  2WQF A;  3K6H A;  3G14 A;  3GR3 A;  1IDT A;  1VFR A;  3BM1 A;  2HAY A;  5J6C A;  4DN2 A;  3KOQ A;  4TTB A;  3PXV A;  1YWQ A;  3X21 A;  2B67 A;  3GE6 A;  3BM2 A;  3HJ9 A; 
#chains in the Genus database with same CATH homology
 1KQB A;  3TNZ A;  2WZV A;  5KO7 A;  1ICV A;  4BN8 A;  1F5V A;  1YLR A;  1NEC A;  1VKW A;  2I7H A;  4TTC A;  3GFA A;  3HZN A;  2YMV A;  1ICU A;  4URP A;  3E39 A;  4XOO A;  1OO6 A;  4G8S A;  5HDJ A;  3N2S A;  1ZCH A;  1YKI A;  1YLU A;  3EO7 A;  3GAG A;  2WZW A;  3M5K A;  5KRD A;  3GB5 A;  1DS7 A;  3X22 A;  3KWK A;  2BKJ A;  3QDL A;  2H0U A;  3OF4 A;  4BN6 A;  3E10 A;  4XOQ A;  2ISL A;  3GH8 A;  2IFA A;  1KQD A;  1V5Y A;  1KQC A;  4XOM A;  1OO5 A;  3GBH A;  1NOX A;  1BKJ A;  3GE5 A;  2ISJ A;  4QLX A;  2FRE A;  4BN7 A;  2ISK A;  1V5Z A;  1ICR A;  5HEI A;  4BNB A;  3EO8 A;  3GFD A;  3HOI A;  4QLY A;  1OON A;  4BN9 A;  4EO3 A;  3EOF A;  1J6R A;  3EK3 A;  3BEM A;  3H4O A;  3TO0 A;  5KO8 A;  2R01 A;  1OOQ A;  2WQF A;  3K6H A;  3G14 A;  3GR3 A;  1IDT A;  1VFR A;  3BM1 A;  2HAY A;  5J6C A;  4DN2 A;  3KOQ A;  4TTB A;  3PXV A;  1YWQ A;  3X21 A;  2B67 A;  3GE6 A;  3BM2 A;  3HJ9 A; 
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