1GCSA

Structure of the bovine gamma-b crystallin at 150k
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
174
structure length
174
Chain Sequence
GKITFYEDRGFQGHCYECSSDCPNLQPYFSRCNSIRVDSGCWMLYERPNYQGHQYFLRRGDYPDYQQWMGFNDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVHSLNVLEGSWVLYEMPSYRGRQYLLRPGEYRRYLDWGAMNAKVGSLRRVMDFY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (12-18)TII1 (8-11)S3 (34-39)EMPTYS7 (77-80)TVIII1 (22-25)TIV2 (47-50)S4 (42-47)S5 (51-57)S6 (60-62)3H1 (65-68)S8 (89-95)S9 (99-105)TVIII2 (93-96)TIV9 (151-154)TIV5 (95-98)S10 (123-128)S14 (166-169)TVIII3 (109-112)TIV7 (136-139)AH1 (112-116)S11 (131-136)S12 (140-146)S13 (149-151)3H2 (154-157)TIV4 (62-65)TI1 (25-28)S1 (2-8)Updating...
connected with : NaN
molecule tags Eye lens protein
source organism Bos taurus
publication title Structure of the Bovine Gamma-B Crystallin at 150K
pubmed rcsb
molecule keywords GAMMA-B CRYSTALLIN
total genus 44
structure length 174
sequence length 174
ec nomenclature
pdb deposition date 1994-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1gcsA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1gcsA01
1DSLA 2V2UA 4JGFA 4GR7A 4PSPA 3HZBA 1A45A 3ENTA 4FD9A 2JDGA 4W9BA 2B1OA 1ZIRA 1M8UA 4NI3A 4IAUA 1A7HA 1ZGTA 2BB2A 4GCRA 4AKAA 2M3TA 1BD7A 1A5DA 2K1WA 1NPSA 1YHPA 1PRRA 1E7NA 5HT9A 1BLBA 1AMMA 2BV2A 1H4AX 2K1XA 4EL6A 2KP5A 3HZ2A 3LWKA 3QK3A 3SNYA 1HK0X 1GAMA 4PSRA 2KFBA 3SO0A 3SO1A 2JDFA 1ELPA 2A5MA 1ZIEA 2M3UA 1GCSA 3ENUA 1AG4A 1YTQA 2DADA 2G98A 3CW3A 3IAJA 1HDFA 1OKIA 1ZIQA 3I9HA 1ZWMA 5HT8A 1PRSA 2NBRA 2M3CA 3SNZA 1ZWOA 1HA4A 1I5IA 4W9AA
chains in the Genus database with same CATH superfamily
2V2UA 4PSPA 4GCRA 1BD7A 1A5DA 1NPSA 1YHPA 1E7NA 1H4AX 3UJZA 1GAMA 2M3UA 3I9HA 3SNZA 2M3TA 1I5IA 1F53A 1BHUA 1C01A 4GR7A 3HZBA 2B1OA 1WKTA 4AKAA 1ZGTA 2K1WA 2K1XA 3LWKA 3SNYA 4PSRA 3SO0A 2KFBA 1ELPA 1ZIEA 1GCSA 1AG4A 1YTQA 2DADA 1ZIQA 2M3CA 1ZWOA 3ENTA 1G6EA 1A45A 4FD9A 2JDGA 1ZIRA 1M8UA 4NI3A 5HT9A 1BLBA 2BV2A 4EL6A 3HZ2A 3SO1A 2JDFA 3CW3A 5HT8A 1GH5A 1PRSA 1HA4A 1DSLA 4JGFA 4W9BA 4IAUA 1A7HA 2BB2A 1PRRA 1AMMA 2KP5A 3QK3A 1HK0X 2A5MA 3ENUA 3IAJA 2G98A 1HDFA 1OKIA 1ZWMA 2NBRA 4W9AA
chains in the Genus database with same CATH topology
1DSLA 2V2UA 4JGFA 4GR7A 4PSPA 3HZBA 1A45A 3ENTA 4FD9A 2JDGA 4W9BA 2B1OA 1ZIRA 1M8UA 4NI3A 4IAUA 1A7HA 1ZGTA 2BB2A 4GCRA 4AKAA 2M3TA 1BD7A 1A5DA 2K1WA 1NPSA 1YHPA 1PRRA 1E7NA 5HT9A 1BLBA 1AMMA 2BV2A 1H4AX 2K1XA 4EL6A 2KP5A 3HZ2A 3LWKA 3QK3A 3SNYA 1HK0X 1GAMA 4PSRA 2KFBA 3SO0A 3SO1A 2JDFA 1ELPA 2A5MA 1ZIEA 2M3UA 1GCSA 3ENUA 1AG4A 1YTQA 2DADA 2G98A 3CW3A 3IAJA 1HDFA 1OKIA 1ZIQA 3I9HA 1ZWMA 5HT8A 1PRSA 2NBRA 2M3CA 3SNZA 1ZWOA 1HA4A 1I5IA 4W9AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DSL A;  2V2U A;  4JGF A;  4GR7 A;  4PSP A;  3HZB A;  1A45 A;  3ENT A;  4FD9 A;  2JDG A;  4W9B A;  2B1O A;  1ZIR A;  1M8U A;  4NI3 A;  4IAU A;  1A7H A;  1ZGT A;  2BB2 A;  4GCR A;  4AKA A;  2M3T A;  1BD7 A;  1A5D A;  2K1W A;  1NPS A;  1YHP A;  1PRR A;  1E7N A;  5HT9 A;  1BLB A;  1AMM A;  2BV2 A;  1H4A X;  2K1X A;  4EL6 A;  2KP5 A;  3HZ2 A;  3LWK A;  3QK3 A;  3SNY A;  1HK0 X;  1GAM A;  4PSR A;  2KFB A;  3SO0 A;  3SO1 A;  2JDF A;  1ELP A;  2A5M A;  1ZIE A;  2M3U A;  1GCS A;  3ENU A;  1AG4 A;  1YTQ A;  2DAD A;  2G98 A;  3CW3 A;  3IAJ A;  1HDF A;  1OKI A;  1ZIQ A;  3I9H A;  1ZWM A;  5HT8 A;  1PRS A;  2NBR A;  2M3C A;  3SNZ A;  1ZWO A;  1HA4 A;  1I5I A;  4W9A A; 
#chains in the Genus database with same CATH topology
 2V2U A;  4PSP A;  4GCR A;  1BD7 A;  1A5D A;  1NPS A;  1YHP A;  1E7N A;  1H4A X;  3UJZ A;  1GAM A;  2M3U A;  3I9H A;  3SNZ A;  2M3T A;  1I5I A;  1F53 A;  1BHU A;  1C01 A;  4GR7 A;  3HZB A;  2B1O A;  1WKT A;  4AKA A;  1ZGT A;  2K1W A;  2K1X A;  3LWK A;  3SNY A;  4PSR A;  3SO0 A;  2KFB A;  1ELP A;  1ZIE A;  1GCS A;  1AG4 A;  1YTQ A;  2DAD A;  1ZIQ A;  2M3C A;  1ZWO A;  3ENT A;  1G6E A;  1A45 A;  4FD9 A;  2JDG A;  1ZIR A;  1M8U A;  4NI3 A;  5HT9 A;  1BLB A;  2BV2 A;  4EL6 A;  3HZ2 A;  3SO1 A;  2JDF A;  3CW3 A;  5HT8 A;  1GH5 A;  1PRS A;  1HA4 A;  1DSL A;  4JGF A;  4W9B A;  4IAU A;  1A7H A;  2BB2 A;  1PRR A;  1AMM A;  2KP5 A;  3QK3 A;  1HK0 X;  2A5M A;  3ENU A;  3IAJ A;  2G98 A;  1HDF A;  1OKI A;  1ZWM A;  2NBR A;  4W9A A; 
#chains in the Genus database with same CATH homology
 1DSL A;  2V2U A;  4JGF A;  4GR7 A;  4PSP A;  3HZB A;  1A45 A;  3ENT A;  4FD9 A;  2JDG A;  4W9B A;  2B1O A;  1ZIR A;  1M8U A;  4NI3 A;  4IAU A;  1A7H A;  1ZGT A;  2BB2 A;  4GCR A;  4AKA A;  2M3T A;  1BD7 A;  1A5D A;  2K1W A;  1NPS A;  1YHP A;  1PRR A;  1E7N A;  5HT9 A;  1BLB A;  1AMM A;  2BV2 A;  1H4A X;  2K1X A;  4EL6 A;  2KP5 A;  3HZ2 A;  3LWK A;  3QK3 A;  3SNY A;  1HK0 X;  1GAM A;  4PSR A;  2KFB A;  3SO0 A;  3SO1 A;  2JDF A;  1ELP A;  2A5M A;  1ZIE A;  2M3U A;  1GCS A;  3ENU A;  1AG4 A;  1YTQ A;  2DAD A;  2G98 A;  3CW3 A;  3IAJ A;  1HDF A;  1OKI A;  1ZIQ A;  3I9H A;  1ZWM A;  5HT8 A;  1PRS A;  2NBR A;  2M3C A;  3SNZ A;  1ZWO A;  1HA4 A;  1I5I A;  4W9A A; 
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