1GG2G

G protein heterotrimer mutant gi_alpha_1(g203a) beta_1 gamma_2 with gdp bound
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
molecule tags Complex (gtp-binding/transducer)
source organism Rattus norvegicus
molecule keywords G PROTEIN GI ALPHA 1
total genus 14
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gg2G00
1GP2G 3AH8G 4KFMG 1XHMB 1B9XB 5HE2G 3PVWG 1B9YB 4PNKG 1GG2G 3CIKG 5KDOG 3KRWG 1A0RG 1OMWG 3V5WG 5HE3G 2BCJG 1TBGE 2TRCG 1GOTG 5HE0G 3PSCG 3SN6G 5HE1G 4MK0G 2PBIA 3PVUG 5TDHG 3KRXG
chains in the Genus database with same CATH superfamily
1GP2G 3AH8G 4KFMG 1XHMB 1B9XB 1HFES 5HE2G 3PVWG 1B9YB 1IOJA 4PNKG 1GG2G 3CIKG 5KDOG 3KRWG 1A0RG 1OMWG 3V5WG 5HE3G 2BCJG 1TBGE 2TRCG 1GOTG 5HE0G 3PSCG 3SN6G 5HE1G 4MK0G 2PBIA 3PVUG 5TDHG 3KRXG
chains in the Genus database with same CATH topology
1GP2G 3AH8G 4KFMG 1XHMB 1B9XB 5HE2G 3PVWG 1B9YB 4PNKG 1GG2G 3CIKG 5KDOG 3KRWG 1A0RG 1OMWG 3V5WG 5HE3G 2BCJG 1TBGE 2TRCG 1GOTG 5HE0G 3PSCG 3SN6G 5HE1G 4MK0G 2PBIA 3PVUG 5TDHG 3KRXG
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1GP2 G;  3AH8 G;  4KFM G;  1XHM B;  1B9X B;  5HE2 G;  3PVW G;  1B9Y B;  4PNK G;  1GG2 G;  3CIK G;  5KDO G;  3KRW G;  1A0R G;  1OMW G;  3V5W G;  5HE3 G;  2BCJ G;  1TBG E;  2TRC G;  1GOT G;  5HE0 G;  3PSC G;  3SN6 G;  5HE1 G;  4MK0 G;  2PBI A;  3PVU G;  5TDH G;  3KRX G; 
#chains in the Genus database with same CATH topology
 1GP2 G;  3AH8 G;  4KFM G;  1XHM B;  1B9X B;  1HFE S;  5HE2 G;  3PVW G;  1B9Y B;  1IOJ A;  4PNK G;  1GG2 G;  3CIK G;  5KDO G;  3KRW G;  1A0R G;  1OMW G;  3V5W G;  5HE3 G;  2BCJ G;  1TBG E;  2TRC G;  1GOT G;  5HE0 G;  3PSC G;  3SN6 G;  5HE1 G;  4MK0 G;  2PBI A;  3PVU G;  5TDH G;  3KRX G; 
#chains in the Genus database with same CATH homology
 1GP2 G;  3AH8 G;  4KFM G;  1XHM B;  1B9X B;  5HE2 G;  3PVW G;  1B9Y B;  4PNK G;  1GG2 G;  3CIK G;  5KDO G;  3KRW G;  1A0R G;  1OMW G;  3V5W G;  5HE3 G;  2BCJ G;  1TBG E;  2TRC G;  1GOT G;  5HE0 G;  3PSC G;  3SN6 G;  5HE1 G;  4MK0 G;  2PBI A;  3PVU G;  5TDH G;  3KRX G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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