1GG2G

G protein heterotrimer mutant gi_alpha_1(g203a) beta_1 gamma_2 with gdp bound
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
molecule tags Complex (gtp-binding/transducer)
source organism Rattus norvegicus
molecule keywords G PROTEIN GI ALPHA 1
total genus 14
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gg2G00
4KFMG 3SN6G 3PVWG 1XHMB 1GP2G 5HE1G 1GG2G 3AH8G 5HE3G 2BCJG 3CIKG 1A0RG 1OMWG 1TBGE 1B9XB 3PVUG 1GOTG 3KRWG 5HE0G 3V5WG 3KRXG 1B9YB 5TDHG 5KDOG 2TRCG 5HE2G 4PNKG 2PBIA 4MK0G 3PSCG
chains in the Genus database with same CATH superfamily
4KFMG 3SN6G 3PVWG 1XHMB 1GP2G 5HE1G 1GG2G 3AH8G 5HE3G 2BCJG 3CIKG 1A0RG 1HFES 1OMWG 1TBGE 1B9XB 1GOTG 3PVUG 3KRWG 1IOJA 5HE0G 3V5WG 3KRXG 1B9YB 5TDHG 5KDOG 2TRCG 5HE2G 4PNKG 2PBIA 4MK0G 3PSCG
chains in the Genus database with same CATH topology
4KFMG 3SN6G 3PVWG 1XHMB 1GP2G 5HE1G 1GG2G 3AH8G 5HE3G 2BCJG 3CIKG 1A0RG 1OMWG 1TBGE 1B9XB 3PVUG 1GOTG 3KRWG 5HE0G 3V5WG 3KRXG 1B9YB 5TDHG 5KDOG 2TRCG 5HE2G 4PNKG 2PBIA 4MK0G 3PSCG
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4KFM G;  3SN6 G;  3PVW G;  1XHM B;  1GP2 G;  5HE1 G;  1GG2 G;  3AH8 G;  5HE3 G;  2BCJ G;  3CIK G;  1A0R G;  1OMW G;  1TBG E;  1B9X B;  3PVU G;  1GOT G;  3KRW G;  5HE0 G;  3V5W G;  3KRX G;  1B9Y B;  5TDH G;  5KDO G;  2TRC G;  5HE2 G;  4PNK G;  2PBI A;  4MK0 G;  3PSC G; 
#chains in the Genus database with same CATH topology
 4KFM G;  3SN6 G;  3PVW G;  1XHM B;  1GP2 G;  5HE1 G;  1GG2 G;  3AH8 G;  5HE3 G;  2BCJ G;  3CIK G;  1A0R G;  1HFE S;  1OMW G;  1TBG E;  1B9X B;  1GOT G;  3PVU G;  3KRW G;  1IOJ A;  5HE0 G;  3V5W G;  3KRX G;  1B9Y B;  5TDH G;  5KDO G;  2TRC G;  5HE2 G;  4PNK G;  2PBI A;  4MK0 G;  3PSC G; 
#chains in the Genus database with same CATH homology
 4KFM G;  3SN6 G;  3PVW G;  1XHM B;  1GP2 G;  5HE1 G;  1GG2 G;  3AH8 G;  5HE3 G;  2BCJ G;  3CIK G;  1A0R G;  1OMW G;  1TBG E;  1B9X B;  3PVU G;  1GOT G;  3KRW G;  5HE0 G;  3V5W G;  3KRX G;  1B9Y B;  5TDH G;  5KDO G;  2TRC G;  5HE2 G;  4PNK G;  2PBI A;  4MK0 G;  3PSC G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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