1GH5 | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	87
structure length	87
Chain Sequence	MINRTDCNENSYLEIHNNEGRDTLCFANAGTMPVAIYGVNWVESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPGHIHEILSIRIY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 87 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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87 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antifungal protein
source organism	Streptomyces tendae
publication title	Solution structure, backbone dynamics and chitin binding of the anti-fungal protein from Streptomyces tendae TU901. pubmed doi rcsb
molecule keywords	ANTIFUNGAL PROTEIN
total genus	13
structure length	87
sequence length	87
ec nomenclature
pdb deposition date	2000-11-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09076	Crystall_2	Beta/Gamma crystallin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.30	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Gamma-B Crystallin; domain 1	1gh5A00

1GH5A 1F53A 1G6EA 1C01A 1BHUA
chains in the Genus database with same CATH superfamily

1GH5A 1AMMA 2BB2A 4IAUA 4PSPA 1G6EA 4PSRA 1ZIQA 2A5MA 1HK0X 4GR7A 1I5IA 1YTQA 1A7HA 1NPSA 2BV2A 4W9BA 1GCSA 2JDGA 1M8UA 1F53A 3IAJA 2M3TA 1BLBA 1GAMA 2M3CA 3CW3A 5HT9A 1ELPA 2KP5A 3I9HA 2V2UA 2DADA 1ZIRA 3SNZA 2K1XA 1A5DA 1ZGTA 4GCRA 4AKAA 1PRSA 1ZWOA 1YHPA 1E7NA 3ENTA 1HA4A 5HT8A 2G98A 1BD7A 1OKIA 1A45A 1WKTA 2K1WA 2NBRA 1ZIEA 3HZ2A 3QK3A 1BHUA 3UJZA 4JGFA 4W9AA 1DSLA 4EL6A 3SNYA 1H4AX 3HZBA 1ZWMA 4NI3A 2M3UA 1C01A 3SO1A 3ENUA 3LWKA 1AG4A 2B1OA 2JDFA 2KFBA 1HDFA 4FD9A 3SO0A 1PRRA
chains in the Genus database with same CATH topology

1GH5A 1F53A 1G6EA 1WKTA 1C01A 1BHUA 3UJZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1GH5 A;  1F53 A;  1G6E A;  1C01 A;  1BHU A; 
#chains in the Genus database with same CATH topology
 1GH5 A;  1AMM A;  2BB2 A;  4IAU A;  4PSP A;  1G6E A;  4PSR A;  1ZIQ A;  2A5M A;  1HK0 X;  4GR7 A;  1I5I A;  1YTQ A;  1A7H A;  1NPS A;  2BV2 A;  4W9B A;  1GCS A;  2JDG A;  1M8U A;  1F53 A;  3IAJ A;  2M3T A;  1BLB A;  1GAM A;  2M3C A;  3CW3 A;  5HT9 A;  1ELP A;  2KP5 A;  3I9H A;  2V2U A;  2DAD A;  1ZIR A;  3SNZ A;  2K1X A;  1A5D A;  1ZGT A;  4GCR A;  4AKA A;  1PRS A;  1ZWO A;  1YHP A;  1E7N A;  3ENT A;  1HA4 A;  5HT8 A;  2G98 A;  1BD7 A;  1OKI A;  1A45 A;  1WKT A;  2K1W A;  2NBR A;  1ZIE A;  3HZ2 A;  3QK3 A;  1BHU A;  3UJZ A;  4JGF A;  4W9A A;  1DSL A;  4EL6 A;  3SNY A;  1H4A X;  3HZB A;  1ZWM A;  4NI3 A;  2M3U A;  1C01 A;  3SO1 A;  3ENU A;  3LWK A;  1AG4 A;  2B1O A;  2JDF A;  2KFB A;  1HDF A;  4FD9 A;  3SO0 A;  1PRR A; 
#chains in the Genus database with same CATH homology
 1GH5 A;  1F53 A;  1G6E A;  1WKT A;  1C01 A;  1BHU A;  3UJZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GH5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations