1GOT | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	58
structure length	58
Chain Sequence	LTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 58 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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58 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The 2.0 A crystal structure of a heterotrimeric G protein. pubmed doi rcsb
molecule keywords	GT-ALPHA/GI-ALPHA CHIMERA
molecule tags	Complex (gtp-binding/transducer)
source organism	Bos taurus
total genus	17
structure length	58
sequence length	58
ec nomenclature
pdb deposition date	1996-08-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	1gotG00

1B9YB 1TBGE 3PSCG 5HE2G 1GG2G 2BCJG 3AH8G 2TRCG 5HE0G 5HE1G 1GP2G 1XHMB 5KDOG 5TDHG 3KRWG 1OMWG 3PVWG 4MK0G 3CIKG 4PNKG 4KFMG 1A0RG 3V5WG 1B9XB 3SN6G 5HE3G 3KRXG 3PVUG 2PBIA 1GOTG
chains in the Genus database with same CATH superfamily

1B9YB 1TBGE 3PSCG 5HE2G 1GG2G 2BCJG 1HFES 3AH8G 2TRCG 5HE0G 5HE1G 1GP2G 1XHMB 1IOJA 5KDOG 5TDHG 3KRWG 1OMWG 3PVWG 4MK0G 3CIKG 4PNKG 4KFMG 1A0RG 3V5WG 1B9XB 3SN6G 5HE3G 3KRXG 3PVUG 2PBIA 1GOTG
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1B9Y B;  1TBG E;  3PSC G;  5HE2 G;  1GG2 G;  2BCJ G;  3AH8 G;  2TRC G;  5HE0 G;  5HE1 G;  1GP2 G;  1XHM B;  5KDO G;  5TDH G;  3KRW G;  1OMW G;  3PVW G;  4MK0 G;  3CIK G;  4PNK G;  4KFM G;  1A0R G;  3V5W G;  1B9X B;  3SN6 G;  5HE3 G;  3KRX G;  3PVU G;  2PBI A;  1GOT G; 
#chains in the Genus database with same CATH topology
 1B9Y B;  1TBG E;  3PSC G;  5HE2 G;  1GG2 G;  2BCJ G;  1HFE S;  3AH8 G;  2TRC G;  5HE0 G;  5HE1 G;  1GP2 G;  1XHM B;  1IOJ A;  5KDO G;  5TDH G;  3KRW G;  1OMW G;  3PVW G;  4MK0 G;  3CIK G;  4PNK G;  4KFM G;  1A0R G;  3V5W G;  1B9X B;  3SN6 G;  5HE3 G;  3KRX G;  3PVU G;  2PBI A;  1GOT G; 
#chains in the Genus database with same CATH homology
 1B9Y B;  1TBG E;  3PSC G;  5HE2 G;  1GG2 G;  2BCJ G;  3AH8 G;  2TRC G;  5HE0 G;  5HE1 G;  1GP2 G;  1XHM B;  5KDO G;  5TDH G;  3KRW G;  1OMW G;  3PVW G;  4MK0 G;  3CIK G;  4PNK G;  4KFM G;  1A0R G;  3V5W G;  1B9X B;  3SN6 G;  5HE3 G;  3KRX G;  3PVU G;  2PBI A;  1GOT G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1GOTG

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN