1GP2 | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	54
structure length	54
Chain Sequence	SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 54 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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54 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2. pubmed doi rcsb
molecule keywords	G PROTEIN GI ALPHA 1
molecule tags	Complex (gtp-binding/transducer)
source organism	Rattus norvegicus
total genus	13
structure length	54
sequence length	54
ec nomenclature
pdb deposition date	1996-11-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
G	PF00631	G-gamma	GGL domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	1gp2G00

2BCJG 2TRCG 3PVUG 1XHMB 5HE2G 5HE1G 3KRXG 5HE3G 3PVWG 3AH8G 5HE0G 1B9YB 1GG2G 4PNKG 3KRWG 3SN6G 1OMWG 3CIKG 1A0RG 4KFMG 1GOTG 1B9XB 3PSCG 5KDOG 1TBGE 2PBIA 4MK0G 5TDHG 3V5WG 1GP2G
chains in the Genus database with same CATH superfamily

2BCJG 2TRCG 3PVUG 1XHMB 5HE2G 1HFES 5HE1G 3KRXG 5HE3G 3PVWG 3AH8G 5HE0G 1B9YB 1GG2G 1IOJA 4PNKG 3KRWG 3SN6G 1OMWG 3CIKG 1A0RG 4KFMG 1GOTG 1B9XB 3PSCG 5KDOG 1TBGE 2PBIA 4MK0G 5TDHG 3V5WG 1GP2G
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2BCJ G;  2TRC G;  3PVU G;  1XHM B;  5HE2 G;  5HE1 G;  3KRX G;  5HE3 G;  3PVW G;  3AH8 G;  5HE0 G;  1B9Y B;  1GG2 G;  4PNK G;  3KRW G;  3SN6 G;  1OMW G;  3CIK G;  1A0R G;  4KFM G;  1GOT G;  1B9X B;  3PSC G;  5KDO G;  1TBG E;  2PBI A;  4MK0 G;  5TDH G;  3V5W G;  1GP2 G; 
#chains in the Genus database with same CATH topology
 2BCJ G;  2TRC G;  3PVU G;  1XHM B;  5HE2 G;  1HFE S;  5HE1 G;  3KRX G;  5HE3 G;  3PVW G;  3AH8 G;  5HE0 G;  1B9Y B;  1GG2 G;  1IOJ A;  4PNK G;  3KRW G;  3SN6 G;  1OMW G;  3CIK G;  1A0R G;  4KFM G;  1GOT G;  1B9X B;  3PSC G;  5KDO G;  1TBG E;  2PBI A;  4MK0 G;  5TDH G;  3V5W G;  1GP2 G; 
#chains in the Genus database with same CATH homology
 2BCJ G;  2TRC G;  3PVU G;  1XHM B;  5HE2 G;  5HE1 G;  3KRX G;  5HE3 G;  3PVW G;  3AH8 G;  5HE0 G;  1B9Y B;  1GG2 G;  4PNK G;  3KRW G;  3SN6 G;  1OMW G;  3CIK G;  1A0R G;  4KFM G;  1GOT G;  1B9X B;  3PSC G;  5KDO G;  1TBG E;  2PBI A;  4MK0 G;  5TDH G;  3V5W G;  1GP2 G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GP2G

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations