1GP2G

G protein heterotrimer gi_alpha_1 beta_1 gamma_2 with gdp bound
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
molecule keywords G PROTEIN GI ALPHA 1
molecule tags Complex (gtp-binding/transducer)
source organism Rattus norvegicus
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gp2G00
1B9YB 3PVUG 3KRWG 3SN6G 2TRCG 1GP2G 1GG2G 3AH8G 3CIKG 5HE0G 1OMWG 1TBGE 5HE2G 5TDHG 5KDOG 1XHMB 5HE1G 4KFMG 3PSCG 3V5WG 5HE3G 4MK0G 1GOTG 1A0RG 2BCJG 3KRXG 1B9XB 2PBIA 4PNKG 3PVWG
chains in the Genus database with same CATH superfamily
1B9YB 3PVUG 3KRWG 3SN6G 1HFES 2TRCG 1GP2G 1IOJA 1GG2G 3AH8G 3CIKG 5HE0G 1OMWG 1TBGE 5HE2G 5TDHG 5KDOG 1XHMB 5HE1G 4KFMG 3PSCG 3V5WG 5HE3G 4MK0G 1GOTG 1A0RG 2BCJG 3KRXG 1B9XB 2PBIA 4PNKG 3PVWG
chains in the Genus database with same CATH topology
1B9YB 3PVUG 3KRWG 3SN6G 2TRCG 1GP2G 1GG2G 3AH8G 3CIKG 5HE0G 1OMWG 1TBGE 5HE2G 5TDHG 5KDOG 1XHMB 5HE1G 4KFMG 3PSCG 3V5WG 5HE3G 4MK0G 1GOTG 1A0RG 2BCJG 3KRXG 1B9XB 2PBIA 4PNKG 3PVWG
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1B9Y B;  3PVU G;  3KRW G;  3SN6 G;  2TRC G;  1GP2 G;  1GG2 G;  3AH8 G;  3CIK G;  5HE0 G;  1OMW G;  1TBG E;  5HE2 G;  5TDH G;  5KDO G;  1XHM B;  5HE1 G;  4KFM G;  3PSC G;  3V5W G;  5HE3 G;  4MK0 G;  1GOT G;  1A0R G;  2BCJ G;  3KRX G;  1B9X B;  2PBI A;  4PNK G;  3PVW G; 
#chains in the Genus database with same CATH topology
 1B9Y B;  3PVU G;  3KRW G;  3SN6 G;  1HFE S;  2TRC G;  1GP2 G;  1IOJ A;  1GG2 G;  3AH8 G;  3CIK G;  5HE0 G;  1OMW G;  1TBG E;  5HE2 G;  5TDH G;  5KDO G;  1XHM B;  5HE1 G;  4KFM G;  3PSC G;  3V5W G;  5HE3 G;  4MK0 G;  1GOT G;  1A0R G;  2BCJ G;  3KRX G;  1B9X B;  2PBI A;  4PNK G;  3PVW G; 
#chains in the Genus database with same CATH homology
 1B9Y B;  3PVU G;  3KRW G;  3SN6 G;  2TRC G;  1GP2 G;  1GG2 G;  3AH8 G;  3CIK G;  5HE0 G;  1OMW G;  1TBG E;  5HE2 G;  5TDH G;  5KDO G;  1XHM B;  5HE1 G;  4KFM G;  3PSC G;  3V5W G;  5HE3 G;  4MK0 G;  1GOT G;  1A0R G;  2BCJ G;  3KRX G;  1B9X B;  2PBI A;  4PNK G;  3PVW G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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