1HFE | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	88
structure length	88
Chain Sequence	VKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHWFDKSKGVKELTTAGKLPNPRASEFEGPYPYE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 88 atoms

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88 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Desulfovibrio desulfuricans iron hydrogenase: the structure shows unusual coordination to an active site Fe binuclear center. pubmed doi rcsb
molecule keywords	PROTEIN (FE-ONLY HYDROGENASE (E.C.1.18.99.1) (SMALLER SUBUNI
molecule tags	Hydrogenase
total genus	23
structure length	88
sequence length	88
chains with identical sequence	T
ec nomenclature	ec 1.12.7.2: Ferredoxin hydrogenase.
pdb deposition date	1998-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
S	PF02256	Fe_hyd_SSU	Iron hydrogenase small subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.20	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Iron hydrogenase, small subunit	1hfeS00

1HFES
chains in the Genus database with same CATH superfamily

3PSCG 3AH8G 3KRWG 1HFES 3SN6G 5HE3G 1OMWG 4KFMG 2BCJG 1IOJA 1GOTG 3CIKG 1GG2G 1B9YB 4PNKG 1GP2G 1TBGE 4MK0G 5KDOG 3KRXG 5TDHG 5HE2G 3PVWG 5HE0G 2TRCG 2PBIA 1XHMB 3V5WG 1A0RG 5HE1G 3PVUG 1B9XB
chains in the Genus database with same CATH topology

1HFES
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1HFE S; 
#chains in the Genus database with same CATH topology
 3PSC G;  3AH8 G;  3KRW G;  1HFE S;  3SN6 G;  5HE3 G;  1OMW G;  4KFM G;  2BCJ G;  1IOJ A;  1GOT G;  3CIK G;  1GG2 G;  1B9Y B;  4PNK G;  1GP2 G;  1TBG E;  4MK0 G;  5KDO G;  3KRX G;  5TDH G;  5HE2 G;  3PVW G;  5HE0 G;  2TRC G;  2PBI A;  1XHM B;  3V5W G;  1A0R G;  5HE1 G;  3PVU G;  1B9X B; 
#chains in the Genus database with same CATH homology
 1HFE S;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1HFES

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations