1J4T | Genus

Total Genus 23

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	148
structure length	148
Chain Sequence	SQTITVGSWGGPGGNGWDEGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Plant protein
publication title	Crystal structures of artocarpin, a Moraceae lectin with mannose specificity, and its complex with methyl-alpha-D-mannose: implications to the generation of carbohydrate specificity. pubmed doi rcsb
molecule keywords	Artocarpin
total genus	23
structure length	148
sequence length	148
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2001-10-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1j4tA00

3VY7A 3R52A 5JM1A 2BN0A 1M26A 2NUOA 1UGWC 2GUCA 3WOCA 1J4UA 5J4XA 5J50A 3VZFA 4R6OA 3WOBA 4PIFA 2BMZA 1JACA 3R50A 1C3MA 1TP8A 4R6PA 2HYQA 3LL0A 5AV7A 1J4TA 1ZGRA 3LLZA 1VBOA 3LL1A 1KU8A 3MITA 2JZ4A 1UH0A 1X1VA 1TOQA 1OUWA 1WS4C 1C3KA 4R6NA 1C3NA 4R6RA 5EXGA 3LLYA 3LM1A 4PITA 5BN6E 3VZGA 2NU5A 4DDNA 2BMYA 1WS4A 3VY6A 2GTYA 3O44A 1UGXA 1WS5C 1UGYC 4GX7A 3MIUA 1UH1A 4MQ0A 1PXDA 2GUDA 1WS5A 1UGYA 4PIUA 3LL2A 2HYRA 1J4SA 3P8SA 3R51A 2GUEA 3VZEA 1XXQA 4AKBA 2GUXA 1VBPA 3MIVA 4AKDA 3LKYA 1XEZA 1XXRA 4PIKA 5J4TA 4AKCA 3AQGA 1KUJA 4AK4A 5J51A 4R6QA 1ZGSA 4WOGA 1UGWA 1JOTA 3APAA
chains in the Genus database with same CATH superfamily

3VY7A 3R52A 5JM1A 2BN0A 4ARXA 1M26A 2NUOA 4QX2A 1UGWC 2GUCA 3WOCA 1J4UA 1CIYA 5J4XA 5J50A 3VZFA 1W99A 4R6OA 3WOBA 4PIFA 2BMZA 1JACA 3R50A 1C3MA 1TP8A 4R6PA 2HYQA 3LL0A 5AV7A 4QX3A 1J4TA 4D8MA 1ZGRA 3LLZA 1VBOA 3EB7A 3LL1A 1DLCA 1VMOA 1KU8A 3MITA 2JZ4A 1UH0A 1X1VA 1TOQA 1OUWA 1WS4C 1C3KA 4R6NA 4W8JA 1C3NA 4MOAA 4R6RA 5EXGA 3LLYA 3LM1A 4PITA 5BN6E 4QX0A 3VZGA 2NU5A 4DDNA 2BMYA 1I5PA 1WS4A 3VY6A 2GTYA 3O44A 2QP2A 4QX1A 1UGXA 1WS5C 1JI6A 4GX7A 1UGYC 3MIUA 1UH1A 4MQ0A 1PXDA 2GUDA 3TOWA 1WS5A 1UGYA 4PIUA 3LL2A 2HYRA 1J4SA 3P8SA 3R51A 2GUEA 3VZEA 1XXQA 4AKBA 2GUXA 1VBPA 3MIVA 4AKDA 3LKYA 1XEZA 1XXRA 4PIKA 5J4TA 4AKCA 3AQGA 1KUJA 4AK4A 5J51A 4R6QA 1ZGSA 4WOGA 2C9KA 1UGWA 4ARYA 1JOTA 3APAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3VY7 A;  3R52 A;  5JM1 A;  2BN0 A;  1M26 A;  2NUO A;  1UGW C;  2GUC A;  3WOC A;  1J4U A;  5J4X A;  5J50 A;  3VZF A;  4R6O A;  3WOB A;  4PIF A;  2BMZ A;  1JAC A;  3R50 A;  1C3M A;  1TP8 A;  4R6P A;  2HYQ A;  3LL0 A;  5AV7 A;  1J4T A;  1ZGR A;  3LLZ A;  1VBO A;  3LL1 A;  1KU8 A;  3MIT A;  2JZ4 A;  1UH0 A;  1X1V A;  1TOQ A;  1OUW A;  1WS4 C;  1C3K A;  4R6N A;  1C3N A;  4R6R A;  5EXG A;  3LLY A;  3LM1 A;  4PIT A;  5BN6 E;  3VZG A;  2NU5 A;  4DDN A;  2BMY A;  1WS4 A;  3VY6 A;  2GTY A;  3O44 A;  1UGX A;  1WS5 C;  1UGY C;  4GX7 A;  3MIU A;  1UH1 A;  4MQ0 A;  1PXD A;  2GUD A;  1WS5 A;  1UGY A;  4PIU A;  3LL2 A;  2HYR A;  1J4S A;  3P8S A;  3R51 A;  2GUE A;  3VZE A;  1XXQ A;  4AKB A;  2GUX A;  1VBP A;  3MIV A;  4AKD A;  3LKY A;  1XEZ A;  1XXR A;  4PIK A;  5J4T A;  4AKC A;  3AQG A;  1KUJ A;  4AK4 A;  5J51 A;  4R6Q A;  1ZGS A;  4WOG A;  1UGW A;  1JOT A;  3APA A; 
#chains in the Genus database with same CATH topology
 3VY7 A;  3R52 A;  5JM1 A;  2BN0 A;  4ARX A;  1M26 A;  2NUO A;  4QX2 A;  1UGW C;  2GUC A;  3WOC A;  1J4U A;  1CIY A;  5J4X A;  5J50 A;  3VZF A;  1W99 A;  4R6O A;  3WOB A;  4PIF A;  2BMZ A;  1JAC A;  3R50 A;  1C3M A;  1TP8 A;  4R6P A;  2HYQ A;  3LL0 A;  5AV7 A;  4QX3 A;  1J4T A;  4D8M A;  1ZGR A;  3LLZ A;  1VBO A;  3EB7 A;  3LL1 A;  1DLC A;  1VMO A;  1KU8 A;  3MIT A;  2JZ4 A;  1UH0 A;  1X1V A;  1TOQ A;  1OUW A;  1WS4 C;  1C3K A;  4R6N A;  4W8J A;  1C3N A;  4MOA A;  4R6R A;  5EXG A;  3LLY A;  3LM1 A;  4PIT A;  5BN6 E;  4QX0 A;  3VZG A;  2NU5 A;  4DDN A;  2BMY A;  1I5P A;  1WS4 A;  3VY6 A;  2GTY A;  3O44 A;  2QP2 A;  4QX1 A;  1UGX A;  1WS5 C;  1JI6 A;  4GX7 A;  1UGY C;  3MIU A;  1UH1 A;  4MQ0 A;  1PXD A;  2GUD A;  3TOW A;  1WS5 A;  1UGY A;  4PIU A;  3LL2 A;  2HYR A;  1J4S A;  3P8S A;  3R51 A;  2GUE A;  3VZE A;  1XXQ A;  4AKB A;  2GUX A;  1VBP A;  3MIV A;  4AKD A;  3LKY A;  1XEZ A;  1XXR A;  4PIK A;  5J4T A;  4AKC A;  3AQG A;  1KUJ A;  4AK4 A;  5J51 A;  4R6Q A;  1ZGS A;  4WOG A;  2C9K A;  1UGW A;  4ARY A;  1JOT A;  3APA A; 
#chains in the Genus database with same CATH homology
 3VY7 A;  3R52 A;  5JM1 A;  2BN0 A;  1M26 A;  2NUO A;  1UGW C;  2GUC A;  3WOC A;  1J4U A;  5J4X A;  5J50 A;  3VZF A;  4R6O A;  3WOB A;  4PIF A;  2BMZ A;  1JAC A;  3R50 A;  1C3M A;  1TP8 A;  4R6P A;  2HYQ A;  3LL0 A;  5AV7 A;  1J4T A;  1ZGR A;  3LLZ A;  1VBO A;  3LL1 A;  1KU8 A;  3MIT A;  2JZ4 A;  1UH0 A;  1X1V A;  1TOQ A;  1OUW A;  1WS4 C;  1C3K A;  4R6N A;  1C3N A;  4R6R A;  5EXG A;  3LLY A;  3LM1 A;  4PIT A;  5BN6 E;  3VZG A;  2NU5 A;  4DDN A;  2BMY A;  1WS4 A;  3VY6 A;  2GTY A;  3O44 A;  1UGX A;  1WS5 C;  1UGY C;  4GX7 A;  3MIU A;  1UH1 A;  4MQ0 A;  1PXD A;  2GUD A;  1WS5 A;  1UGY A;  4PIU A;  3LL2 A;  2HYR A;  1J4S A;  3P8S A;  3R51 A;  2GUE A;  3VZE A;  1XXQ A;  4AKB A;  2GUX A;  1VBP A;  3MIV A;  4AKD A;  3LKY A;  1XEZ A;  1XXR A;  4PIK A;  5J4T A;  4AKC A;  3AQG A;  1KUJ A;  4AK4 A;  5J51 A;  4R6Q A;  1ZGS A;  4WOG A;  1UGW A;  1JOT A;  3APA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1J4TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations