1JACA

A novel mode of carbohydrate recognition in jacalin, a moraceae plant lectin with a beta-prism
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)S11 (124-132)EMPTYS4 (37-44)TIV2 (33-36)S2 (11-19)TI1 (20-23)S7 (78-88)S3 (25-34)TIV3 (46-49)TIV4 (59-62)TI2 (60-63)S8 (92-97)TI3 (88-91)S6 (65-75)TVIII1 (108-111)TIV5 (74-77)O1 (98-100)TIV6 (120-123)S10 (112-120)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Lectin
publication title A novel mode of carbohydrate recognition in jacalin, a Moraceae plant lectin with a beta-prism fold.
pubmed doi rcsb
molecule keywords JACALIN
total genus 26
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 1996-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1jacA00
1J4TA 3APAA 1PXDA 1WS4C 1KU8A 2GUCA 3VY7A 5AV7A 5J4XA 2HYRA 4R6NA 2GTYA 3VZEA 5J50A 3R51A 2NU5A 2GUEA 1TOQA 1UGYC 1JOTA 3MIVA 1VBOA 4PIUA 2NUOA 1C3NA 4AKCA 2GUXA 1X1VA 2HYQA 1ZGRA 1WS5A 1XXRA 2BN0A 3VZGA 3LLYA 1UGWA 1XXQA 1OUWA 4MQ0A 1UGXA 1J4SA 5EXGA 3R50A 1JACA 3P8SA 4WOGA 4GX7A 1XEZA 1KUJA 4PIFA 3LLZA 2JZ4A 1J4UA 1C3KA 4R6QA 5J4TA 1WS5C 4DDNA 2BMYA 3MIUA 1ZGSA 1UGWC 1TP8A 1UH0A 5JM1A 2GUDA 3O44A 4R6PA 1WS4A 3VY6A 3VZFA 1VBPA 2BMZA 1C3MA 3R52A 4PIKA 3LL1A 1UH1A 4AK4A 1UGYA 4AKDA 3WOCA 5BN6E 1M26A 4R6RA 3LL0A 3LM1A 3AQGA 4PITA 3LL2A 4AKBA 4R6OA 3LKYA 3MITA 5J51A 3WOBA
chains in the Genus database with same CATH superfamily
1J4TA 3APAA 1PXDA 1WS4C 1KU8A 1VMOA 2GUCA 3VY7A 5AV7A 5J4XA 2HYRA 4R6NA 4D8MA 2GTYA 3VZEA 5J50A 3R51A 2NU5A 2C9KA 2GUEA 1TOQA 4QX3A 1UGYC 4ARYA 1JOTA 4MOAA 3MIVA 1VBOA 4PIUA 2NUOA 1C3NA 4AKCA 2GUXA 1X1VA 2HYQA 1ZGRA 1WS5A 1XXRA 2BN0A 3VZGA 1W99A 3LLYA 1UGWA 4QX2A 1XXQA 1OUWA 4MQ0A 2QP2A 1UGXA 1J4SA 1JI6A 3TOWA 5EXGA 3R50A 1JACA 3P8SA 4WOGA 4GX7A 1CIYA 1XEZA 1KUJA 4ARXA 4PIFA 3LLZA 2JZ4A 1J4UA 1C3KA 4R6QA 5J4TA 4W8JA 1WS5C 4DDNA 1I5PA 2BMYA 3MIUA 1ZGSA 1UGWC 1TP8A 1UH0A 3EB7A 5JM1A 2GUDA 3O44A 4R6PA 1WS4A 3VY6A 3VZFA 1VBPA 2BMZA 1C3MA 3R52A 4PIKA 3LL1A 1UH1A 4AK4A 1DLCA 1UGYA 4AKDA 3WOCA 5BN6E 1M26A 4R6RA 3LL0A 3LM1A 3AQGA 4PITA 4QX0A 3LL2A 4AKBA 4R6OA 4QX1A 3LKYA 3MITA 5J51A 3WOBA
chains in the Genus database with same CATH topology
1J4TA 3APAA 1PXDA 1WS4C 1KU8A 2GUCA 3VY7A 5AV7A 5J4XA 2HYRA 4R6NA 2GTYA 3VZEA 5J50A 3R51A 2NU5A 2GUEA 1TOQA 1UGYC 1JOTA 3MIVA 1VBOA 4PIUA 2NUOA 1C3NA 4AKCA 2GUXA 1X1VA 2HYQA 1ZGRA 1WS5A 1XXRA 2BN0A 3VZGA 3LLYA 1UGWA 1XXQA 1OUWA 4MQ0A 1UGXA 1J4SA 5EXGA 3R50A 1JACA 3P8SA 4WOGA 4GX7A 1XEZA 1KUJA 4PIFA 3LLZA 2JZ4A 1J4UA 1C3KA 4R6QA 5J4TA 1WS5C 4DDNA 2BMYA 3MIUA 1ZGSA 1UGWC 1TP8A 1UH0A 5JM1A 2GUDA 3O44A 4R6PA 1WS4A 3VY6A 3VZFA 1VBPA 2BMZA 1C3MA 3R52A 4PIKA 3LL1A 1UH1A 4AK4A 1UGYA 4AKDA 3WOCA 5BN6E 1M26A 4R6RA 3LL0A 3LM1A 3AQGA 4PITA 3LL2A 4AKBA 4R6OA 3LKYA 3MITA 5J51A 3WOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4T A;  3APA A;  1PXD A;  1WS4 C;  1KU8 A;  2GUC A;  3VY7 A;  5AV7 A;  5J4X A;  2HYR A;  4R6N A;  2GTY A;  3VZE A;  5J50 A;  3R51 A;  2NU5 A;  2GUE A;  1TOQ A;  1UGY C;  1JOT A;  3MIV A;  1VBO A;  4PIU A;  2NUO A;  1C3N A;  4AKC A;  2GUX A;  1X1V A;  2HYQ A;  1ZGR A;  1WS5 A;  1XXR A;  2BN0 A;  3VZG A;  3LLY A;  1UGW A;  1XXQ A;  1OUW A;  4MQ0 A;  1UGX A;  1J4S A;  5EXG A;  3R50 A;  1JAC A;  3P8S A;  4WOG A;  4GX7 A;  1XEZ A;  1KUJ A;  4PIF A;  3LLZ A;  2JZ4 A;  1J4U A;  1C3K A;  4R6Q A;  5J4T A;  1WS5 C;  4DDN A;  2BMY A;  3MIU A;  1ZGS A;  1UGW C;  1TP8 A;  1UH0 A;  5JM1 A;  2GUD A;  3O44 A;  4R6P A;  1WS4 A;  3VY6 A;  3VZF A;  1VBP A;  2BMZ A;  1C3M A;  3R52 A;  4PIK A;  3LL1 A;  1UH1 A;  4AK4 A;  1UGY A;  4AKD A;  3WOC A;  5BN6 E;  1M26 A;  4R6R A;  3LL0 A;  3LM1 A;  3AQG A;  4PIT A;  3LL2 A;  4AKB A;  4R6O A;  3LKY A;  3MIT A;  5J51 A;  3WOB A; 
#chains in the Genus database with same CATH topology
 1J4T A;  3APA A;  1PXD A;  1WS4 C;  1KU8 A;  1VMO A;  2GUC A;  3VY7 A;  5AV7 A;  5J4X A;  2HYR A;  4R6N A;  4D8M A;  2GTY A;  3VZE A;  5J50 A;  3R51 A;  2NU5 A;  2C9K A;  2GUE A;  1TOQ A;  4QX3 A;  1UGY C;  4ARY A;  1JOT A;  4MOA A;  3MIV A;  1VBO A;  4PIU A;  2NUO A;  1C3N A;  4AKC A;  2GUX A;  1X1V A;  2HYQ A;  1ZGR A;  1WS5 A;  1XXR A;  2BN0 A;  3VZG A;  1W99 A;  3LLY A;  1UGW A;  4QX2 A;  1XXQ A;  1OUW A;  4MQ0 A;  2QP2 A;  1UGX A;  1J4S A;  1JI6 A;  3TOW A;  5EXG A;  3R50 A;  1JAC A;  3P8S A;  4WOG A;  4GX7 A;  1CIY A;  1XEZ A;  1KUJ A;  4ARX A;  4PIF A;  3LLZ A;  2JZ4 A;  1J4U A;  1C3K A;  4R6Q A;  5J4T A;  4W8J A;  1WS5 C;  4DDN A;  1I5P A;  2BMY A;  3MIU A;  1ZGS A;  1UGW C;  1TP8 A;  1UH0 A;  3EB7 A;  5JM1 A;  2GUD A;  3O44 A;  4R6P A;  1WS4 A;  3VY6 A;  3VZF A;  1VBP A;  2BMZ A;  1C3M A;  3R52 A;  4PIK A;  3LL1 A;  1UH1 A;  4AK4 A;  1DLC A;  1UGY A;  4AKD A;  3WOC A;  5BN6 E;  1M26 A;  4R6R A;  3LL0 A;  3LM1 A;  3AQG A;  4PIT A;  4QX0 A;  3LL2 A;  4AKB A;  4R6O A;  4QX1 A;  3LKY A;  3MIT A;  5J51 A;  3WOB A; 
#chains in the Genus database with same CATH homology
 1J4T A;  3APA A;  1PXD A;  1WS4 C;  1KU8 A;  2GUC A;  3VY7 A;  5AV7 A;  5J4X A;  2HYR A;  4R6N A;  2GTY A;  3VZE A;  5J50 A;  3R51 A;  2NU5 A;  2GUE A;  1TOQ A;  1UGY C;  1JOT A;  3MIV A;  1VBO A;  4PIU A;  2NUO A;  1C3N A;  4AKC A;  2GUX A;  1X1V A;  2HYQ A;  1ZGR A;  1WS5 A;  1XXR A;  2BN0 A;  3VZG A;  3LLY A;  1UGW A;  1XXQ A;  1OUW A;  4MQ0 A;  1UGX A;  1J4S A;  5EXG A;  3R50 A;  1JAC A;  3P8S A;  4WOG A;  4GX7 A;  1XEZ A;  1KUJ A;  4PIF A;  3LLZ A;  2JZ4 A;  1J4U A;  1C3K A;  4R6Q A;  5J4T A;  1WS5 C;  4DDN A;  2BMY A;  3MIU A;  1ZGS A;  1UGW C;  1TP8 A;  1UH0 A;  5JM1 A;  2GUD A;  3O44 A;  4R6P A;  1WS4 A;  3VY6 A;  3VZF A;  1VBP A;  2BMZ A;  1C3M A;  3R52 A;  4PIK A;  3LL1 A;  1UH1 A;  4AK4 A;  1UGY A;  4AKD A;  3WOC A;  5BN6 E;  1M26 A;  4R6R A;  3LL0 A;  3LM1 A;  3AQG A;  4PIT A;  3LL2 A;  4AKB A;  4R6O A;  3LKY A;  3MIT A;  5J51 A;  3WOB A; 
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