1JMNA

Solution structure of the viscotoxin a2
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNTCRFGGGSRQVCASLSGCKIISASTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of the Viscotoxin A2
rcsb
molecule tags Toxin
source organism Viscum album
molecule keywords viscotoxin A2
total genus 8
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1jmnA00
1CNRA 2EYDA 4FC1A 1BHPA 2EYAA 1ORLA 1OKHA 2FD9A 1CCNA 1CCMA 1CRNA 2FD7A 1JXYA 2EYBA 3C8PA 1JXUA 1JXWA 3NIRA 3SZSA 2V9BA 1AB1A 1WUWA 1EJGA 2PLHA 1JMNA 2EYCA 3U7TA 3UE7B 1ED0A 1CBNA 1JXXA 1YVAA 1CXRA 1JMPA 1JXTA 1YV8A 1NBLA
chains in the Genus database with same CATH superfamily
1CNRA 2EYDA 4FC1A 1BHPA 2EYAA 1ORLA 1OKHA 2FD9A 1CCNA 1CCMA 1CRNA 1H5WA 2FD7A 1JXYA 2EYBA 3C8PA 1JXUA 1JXWA 1JNBA 3NIRA 3SZSA 2V9BA 1AB1A 1WUWA 1EJGA 2PLHA 1JMNA 2EYCA 3U7TA 3UE7B 1ED0A 1IJGA 1FOUA 1CBNA 1JXXA 1YVAA 1CXRA 1JMPA 1JXTA 1YV8A 1NBLA
chains in the Genus database with same CATH topology
1CNRA 2EYDA 4FC1A 1BHPA 2EYAA 1ORLA 1OKHA 2FD9A 1CCNA 1CCMA 1CRNA 2FD7A 1JXYA 2EYBA 3C8PA 1JXUA 1JXWA 3NIRA 3SZSA 2V9BA 1AB1A 1WUWA 1EJGA 2PLHA 1JMNA 2EYCA 3U7TA 3UE7B 1ED0A 1CBNA 1JXXA 1YVAA 1CXRA 1JMPA 1JXTA 1YV8A 1NBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CNR A;  2EYD A;  4FC1 A;  1BHP A;  2EYA A;  1ORL A;  1OKH A;  2FD9 A;  1CCN A;  1CCM A;  1CRN A;  2FD7 A;  1JXY A;  2EYB A;  3C8P A;  1JXU A;  1JXW A;  3NIR A;  3SZS A;  2V9B A;  1AB1 A;  1WUW A;  1EJG A;  2PLH A;  1JMN A;  2EYC A;  3U7T A;  3UE7 B;  1ED0 A;  1CBN A;  1JXX A;  1YVA A;  1CXR A;  1JMP A;  1JXT A;  1YV8 A;  1NBL A; 
#chains in the Genus database with same CATH topology
 1CNR A;  2EYD A;  4FC1 A;  1BHP A;  2EYA A;  1ORL A;  1OKH A;  2FD9 A;  1CCN A;  1CCM A;  1CRN A;  1H5W A;  2FD7 A;  1JXY A;  2EYB A;  3C8P A;  1JXU A;  1JXW A;  1JNB A;  3NIR A;  3SZS A;  2V9B A;  1AB1 A;  1WUW A;  1EJG A;  2PLH A;  1JMN A;  2EYC A;  3U7T A;  3UE7 B;  1ED0 A;  1IJG A;  1FOU A;  1CBN A;  1JXX A;  1YVA A;  1CXR A;  1JMP A;  1JXT A;  1YV8 A;  1NBL A; 
#chains in the Genus database with same CATH homology
 1CNR A;  2EYD A;  4FC1 A;  1BHP A;  2EYA A;  1ORL A;  1OKH A;  2FD9 A;  1CCN A;  1CCM A;  1CRN A;  2FD7 A;  1JXY A;  2EYB A;  3C8P A;  1JXU A;  1JXW A;  3NIR A;  3SZS A;  2V9B A;  1AB1 A;  1WUW A;  1EJG A;  2PLH A;  1JMN A;  2EYC A;  3U7T A;  3UE7 B;  1ED0 A;  1CBN A;  1JXX A;  1YVA A;  1CXR A;  1JMP A;  1JXT A;  1YV8 A;  1NBL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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