1IJGA

Structure of the bacteriophage phi29 head-tail connector protein
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
275
structure length
257
Chain Sequence
SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Bacillus phage phi29
publication title Structure determination of the head-tail connector of bacteriophage phi29.
pubmed doi rcsb
molecule keywords UPPER COLLAR PROTEIN
total genus 77
structure length 257
sequence length 275
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2001-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05352 Phage_connector Phage Connector (GP10)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.30 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1ijgA01
2.40.500.10 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein) 1ijgA02
3.30.1350.20 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3 1ijgA03
1IJGA 1H5WA 1FOUA 1JNBA
chains in the Genus database with same CATH superfamily
2QHBA 3M99C 2BXCA 4FFKA 2JUHA 1I0HA 1J7EA 2KWFA 4OTTA 4GUNA 3KJLA 4N0UD 2V9BA 1HK1A 5B5TA 4WA6B 3EVKA 4GDLB 4F6EA 2XW0A 1MM8A 2LOQA 1CNRA 5IJEA 4FC1A 3JRYA 5GIPA 2ROHA 2AW9A 2BXEA 5HOZA 2EFCA 1VZSA 1BSMA 4PO0A 4OTUA 4E99A 1BJ5A 3FWBC 1ZSPA 1MMMA 4NAWB 2BXLA 3ICXA 4E4EA 1MNGA 1XILA 3SZSA 2E0XA 3JQZA 5AG2A 2EFEA 2DYMA 4ZBRA 1JXUA 1JXXA 1E7FA 2Z8IA 1JA8A 1MA9A 2BXOA 3NIRA 2OZBB 5DBYA 3A73A 2P4KA 2BXPA 1PM9A 2BXDA 2ADQB 2Z8JA 1ZUQA 3WHRA 1GNIA 4G03A 3KDRA 2XMOA 3SQJA 1XDCA 4F5VA 4C31B 2DBUA 1JXYA 2BXIA 3NVIA 5IFOA 4K71A 5ID9A 1GN2A 1H9ZA 4OR0A 2DBWA 3GA9L 1UORA 1VEWA 2EYBA 4LUHA 5DQFA 3MHSB 2DBXA 2FD9A 3V03A 1CCMA 2QM6A 1N0JA 1CBNA 3KIKA 4ZBQA 3H3AA 3TJTA 2I30A 1AR4A 1AO6A 3U7TA 2BXQA 1HK5A 1E7BA 4JZ2A 2CE4A 2XW1A 2XSIA 1I08A 1KW2A 1MIWA 3LU6A 1E7IA 3G9KD 1JXWA 1CRNA 1BKEA 2E0YA 1ZTEA 3AK3A 2V36A 3V09A 5A9GA 3PLAA 1VFIA 2PLHA 4BKEA 5FUOA 1PL4A 1JNBA 1EN6A 2I2ZA 1MSDA 3LSUA 1OKHA 3BFRA 1J78A 1HA2A 1N5UA 3OT7A 4Z69A 1QNMA 1E7AA 1AP6A 3SIVB 1WB8A 2XVUA 2VDBA 2EYAA 4M70B 3V08A 1LUWA 1NT2B 1MUHA 1WUWA 1TXUA 2Z8KA 4G01A 2BXBA 1KDXA 4JK4A 1HK2A 3MDSA 2VUFA 1AB1A 1GN6A 1E7EA 3LU8A 2BXKA 4C7UA 4HGMB 1MA1A 4FIPB 4N0FD 1IXBA 1GN3A 1KXPD 1HK3A 2AJEA 3DC5A 3BPJA 4LB9A 2GUTA 1N0NA 2EFHA 2K0NA 1IX9A 2YDFA 2QKAA 3LU7A 3W1SA 1EN5A 3C3SA 1B06A 1EM1A 2DG5A 2GDSA 2XVWA 1Y67A 4L9QA 1XREA 1YV8A 4ZUXV 4L9KA 5GINA 1AR5A 4ZBKA 3CEIA 1JR9A 2DYOA 3AK1A 2BXHA 4I9OA 1ED0A 4YIPA 2CKXA 5IIHA 1BT8A 2NNWA 1LNSA 2ADPA 3B9MA 4LB2A 1YVAA 2BXAA 5IJFA 3DC6A 3GQXA 3SIUB 1H5WA 1VARA 4YIOA 1KKCA 1E7CA 3NVMA 1NBLA 1SB0A 1SZXA 5GIOA 2BX8A 1AVMA 1O9XA 5GHKA 4LA0A 3C3TA 4GG2A 3VQIA 4G04A 2EFDA 2BXMA 1E7HA 4F5TA 1D5NA 2XVQA 4BY9C 4N3ZA 3H37A 1ORLA 5IIUA 4FK5B 1BM0A 5D7GA 1BS3A 1GN4A 4ZC6A 1MIVA 3C8PA 1JMNA 1LOTA 1P7GA 4JZGA 1CXRA 2BXGA 2BXNA 3A75A 5ID7A 1IJGA 4J2VA 1BHPA 1HK4A 4FJCB 1TF0A 3K9SA 4JYYA 4IW1A 1XUQA 3MHHB 3CX9A 2CDYA 4F5UA 1MUSA 4DM0A 3RN4A 4Z9OA 4TQ0A 4GDXA 2LQHA 4HGKA 5BPKA 4EMXA 3GQUA 3ECPA 1E78A 2QMCA 3UIVA 4MBEC 3FNMA 2BXFA 4L8UA 1JXTA 2QKCA 2RCVA 3UE7B 3FWCC 2FD7A 4TQ1A 2OT3A 2KBZA 2LXSA 4W4UB 4ZCGA 3WHQA 2AGHB 1CCNA 3WHSA 4K2CA 4S1YA 4IW2A 1EN4A 1WB7A 1ZLZA 3KKYA 3QVNA 4GDKB 3TDLA 3NMUA 2EYCA 5IIXA 5IJ5A 4LUFA 1E7GA 2VUEA 4OT2A 1EJGA 2LQIA 1GNJA 1MIYA 2EYDA 1FOUA 4F5SA 4BR6A 1AP5A 2XVVA 2LXTA 4D7XA 4DHXB 1JMPA 3B9LA 3NVKA 1LUVA 1IDSA 4X9QA 2NQOA 3AK2A
chains in the Genus database with same CATH topology
2BXIA 4G01A 2BXBA 5IIUA 2QHBA 3NVIA 4FK5B 1BM0A 5D7GA 3M99C 2BXCA 5IFOA 2JUHA 4JK4A 4ZC6A 1HK2A 1MIVA 2VUFA 4K71A 5ID9A 1H9ZA 1LOTA 4OR0A 1J7EA 4OTTA 2DBWA 2BXGA 1E7EA 1UORA 2BXNA 3A75A 3GA9L 1IJGA 3KJLA 4J2VA 5ID7A 3LU8A 4N0UD 1HK1A 5B5TA 4LUHA 2BXKA 5DQFA 4WA6B 4HGMB 4GDLB 3MHSB 2DBXA 2XW0A 1HK4A 4FJCB 1TF0A 2LOQA 4FIPB 3V03A 2QM6A 4N0FD 5IJEA 3KIKA 4IW1A 4ZBQA 1KXPD 3H3AA 1HK3A 2I30A 2AJEA 3MHHB 3CX9A 4LB9A 3JRYA 4F5UA 2EFHA 1AO6A 5GIPA 2BXQA 1HK5A 2ROHA 2BXEA 4Z9OA 5HOZA 2YDFA 4TQ0A 1E7BA 2EFCA 3LU7A 4GDXA 3W1SA 1VZSA 4HGKA 4PO0A 5BPKA 2DG5A 4EMXA 2XVWA 3GQUA 4L9QA 1E78A 2QMCA 3UIVA 4OTUA 2XW1A 2XSIA 4MBEC 3FNMA 4E99A 4ZUXV 1BJ5A 1KW2A 3FWBC 2BXFA 4L9KA 4L8UA 4NAWB 5GINA 2BXLA 1MIWA 3ICXA 1E7IA 3LU6A 4ZBKA 3G9KD 2DYOA 2E0XA 2BXHA 3FWCC 4TQ1A 1BKEA 2E0YA 2OT3A 2KBZA 3JQZA 2V36A 4W4UB 4ZCGA 3WHQA 3V09A 2CKXA 2EFEA 3PLAA 2DYMA 3WHSA 4ZBRA 5IIHA 1VFIA 4K2CA 4S1YA 4BKEA 2NNWA 1LNSA 4IW2A 5FUOA 3B9MA 4LB2A 4GDKB 1JNBA 2BXAA 5IJFA 1E7FA 2Z8IA 3TDLA 3NMUA 2I2ZA 3GQXA 3SIUB 1H5WA 1MA9A 1E7CA 2BXOA 2OZBB 5DBYA 3A73A 5IJ5A 3NVMA 5IIXA 2BXPA 5GIOA 2BXDA 2BX8A 1J78A 1HA2A 1O9XA 2Z8JA 5GHKA 4LA0A 4GG2A 3VQIA 4LUFA 4G04A 3WHRA 1E7GA 1N5UA 2EFDA 1GNIA 2VUEA 4Z69A 4OT2A 1GNJA 1MIYA 2BXMA 4G03A 1E7AA 1E7HA 4F5TA 1FOUA 2XMOA 4F5SA 3SQJA 3SIVB 2XVVA 2XVUA 2VDBA 2XVQA 4BY9C 4N3ZA 4M70B 4DHXB 3H37A 3V08A 4F5VA 3B9LA 1NT2B 4C31B 2DBUA 3NVKA 1TXUA 2Z8KA 2NQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IJG A;  1H5W A;  1FOU A;  1JNB A; 
#chains in the Genus database with same CATH topology
 2QHB A;  3M99 C;  2BXC A;  4FFK A;  2JUH A;  1I0H A;  1J7E A;  2KWF A;  4OTT A;  4GUN A;  3KJL A;  4N0U D;  2V9B A;  1HK1 A;  5B5T A;  4WA6 B;  3EVK A;  4GDL B;  4F6E A;  2XW0 A;  1MM8 A;  2LOQ A;  1CNR A;  5IJE A;  4FC1 A;  3JRY A;  5GIP A;  2ROH A;  2AW9 A;  2BXE A;  5HOZ A;  2EFC A;  1VZS A;  1BSM A;  4PO0 A;  4OTU A;  4E99 A;  1BJ5 A;  3FWB C;  1ZSP A;  1MMM A;  4NAW B;  2BXL A;  3ICX A;  4E4E A;  1MNG A;  1XIL A;  3SZS A;  2E0X A;  3JQZ A;  5AG2 A;  2EFE A;  2DYM A;  4ZBR A;  1JXU A;  1JXX A;  1E7F A;  2Z8I A;  1JA8 A;  1MA9 A;  2BXO A;  3NIR A;  2OZB B;  5DBY A;  3A73 A;  2P4K A;  2BXP A;  1PM9 A;  2BXD A;  2ADQ B;  2Z8J A;  1ZUQ A;  3WHR A;  1GNI A;  4G03 A;  3KDR A;  2XMO A;  3SQJ A;  1XDC A;  4F5V A;  4C31 B;  2DBU A;  1JXY A;  2BXI A;  3NVI A;  5IFO A;  4K71 A;  5ID9 A;  1GN2 A;  1H9Z A;  4OR0 A;  2DBW A;  3GA9 L;  1UOR A;  1VEW A;  2EYB A;  4LUH A;  5DQF A;  3MHS B;  2DBX A;  2FD9 A;  3V03 A;  1CCM A;  2QM6 A;  1N0J A;  1CBN A;  3KIK A;  4ZBQ A;  3H3A A;  3TJT A;  2I30 A;  1AR4 A;  1AO6 A;  3U7T A;  2BXQ A;  1HK5 A;  1E7B A;  4JZ2 A;  2CE4 A;  2XW1 A;  2XSI A;  1I08 A;  1KW2 A;  1MIW A;  3LU6 A;  1E7I A;  3G9K D;  1JXW A;  1CRN A;  1BKE A;  2E0Y A;  1ZTE A;  3AK3 A;  2V36 A;  3V09 A;  5A9G A;  3PLA A;  1VFI A;  2PLH A;  4BKE A;  5FUO A;  1PL4 A;  1JNB A;  1EN6 A;  2I2Z A;  1MSD A;  3LSU A;  1OKH A;  3BFR A;  1J78 A;  1HA2 A;  1N5U A;  3OT7 A;  4Z69 A;  1QNM A;  1E7A A;  1AP6 A;  3SIV B;  1WB8 A;  2XVU A;  2VDB A;  2EYA A;  4M70 B;  3V08 A;  1LUW A;  1NT2 B;  1MUH A;  1WUW A;  1TXU A;  2Z8K A;  4G01 A;  2BXB A;  1KDX A;  4JK4 A;  1HK2 A;  3MDS A;  2VUF A;  1AB1 A;  1GN6 A;  1E7E A;  3LU8 A;  2BXK A;  4C7U A;  4HGM B;  1MA1 A;  4FIP B;  4N0F D;  1IXB A;  1GN3 A;  1KXP D;  1HK3 A;  2AJE A;  3DC5 A;  3BPJ A;  4LB9 A;  2GUT A;  1N0N A;  2EFH A;  2K0N A;  1IX9 A;  2YDF A;  2QKA A;  3LU7 A;  3W1S A;  1EN5 A;  3C3S A;  1B06 A;  1EM1 A;  2DG5 A;  2GDS A;  2XVW A;  1Y67 A;  4L9Q A;  1XRE A;  1YV8 A;  4ZUX V;  4L9K A;  5GIN A;  1AR5 A;  4ZBK A;  3CEI A;  1JR9 A;  2DYO A;  3AK1 A;  2BXH A;  4I9O A;  1ED0 A;  4YIP A;  2CKX A;  5IIH A;  1BT8 A;  2NNW A;  1LNS A;  2ADP A;  3B9M A;  4LB2 A;  1YVA A;  2BXA A;  5IJF A;  3DC6 A;  3GQX A;  3SIU B;  1H5W A;  1VAR A;  4YIO A;  1KKC A;  1E7C A;  3NVM A;  1NBL A;  1SB0 A;  1SZX A;  5GIO A;  2BX8 A;  1AVM A;  1O9X A;  5GHK A;  4LA0 A;  3C3T A;  4GG2 A;  3VQI A;  4G04 A;  2EFD A;  2BXM A;  1E7H A;  4F5T A;  1D5N A;  2XVQ A;  4BY9 C;  4N3Z A;  3H37 A;  1ORL A;  5IIU A;  4FK5 B;  1BM0 A;  5D7G A;  1BS3 A;  1GN4 A;  4ZC6 A;  1MIV A;  3C8P A;  1JMN A;  1LOT A;  1P7G A;  4JZG A;  1CXR A;  2BXG A;  2BXN A;  3A75 A;  5ID7 A;  1IJG A;  4J2V A;  1BHP A;  1HK4 A;  4FJC B;  1TF0 A;  3K9S A;  4JYY A;  4IW1 A;  1XUQ A;  3MHH B;  3CX9 A;  2CDY A;  4F5U A;  1MUS A;  4DM0 A;  3RN4 A;  4Z9O A;  4TQ0 A;  4GDX A;  2LQH A;  4HGK A;  5BPK A;  4EMX A;  3GQU A;  3ECP A;  1E78 A;  2QMC A;  3UIV A;  4MBE C;  3FNM A;  2BXF A;  4L8U A;  1JXT A;  2QKC A;  2RCV A;  3UE7 B;  3FWC C;  2FD7 A;  4TQ1 A;  2OT3 A;  2KBZ A;  2LXS A;  4W4U B;  4ZCG A;  3WHQ A;  2AGH B;  1CCN A;  3WHS A;  4K2C A;  4S1Y A;  4IW2 A;  1EN4 A;  1WB7 A;  1ZLZ A;  3KKY A;  3QVN A;  4GDK B;  3TDL A;  3NMU A;  2EYC A;  5IIX A;  5IJ5 A;  4LUF A;  1E7G A;  2VUE A;  4OT2 A;  1EJG A;  2LQI A;  1GNJ A;  1MIY A;  2EYD A;  1FOU A;  4F5S A;  4BR6 A;  1AP5 A;  2XVV A;  2LXT A;  4D7X A;  4DHX B;  1JMP A;  3B9L A;  3NVK A;  1LUV A;  1IDS A;  4X9Q A;  2NQO A;  3AK2 A; 
#chains in the Genus database with same CATH homology
 2BXI A;  4G01 A;  2BXB A;  5IIU A;  2QHB A;  3NVI A;  4FK5 B;  1BM0 A;  5D7G A;  3M99 C;  2BXC A;  5IFO A;  2JUH A;  4JK4 A;  4ZC6 A;  1HK2 A;  1MIV A;  2VUF A;  4K71 A;  5ID9 A;  1H9Z A;  1LOT A;  4OR0 A;  1J7E A;  4OTT A;  2DBW A;  2BXG A;  1E7E A;  1UOR A;  2BXN A;  3A75 A;  3GA9 L;  1IJG A;  3KJL A;  4J2V A;  5ID7 A;  3LU8 A;  4N0U D;  1HK1 A;  5B5T A;  4LUH A;  2BXK A;  5DQF A;  4WA6 B;  4HGM B;  4GDL B;  3MHS B;  2DBX A;  2XW0 A;  1HK4 A;  4FJC B;  1TF0 A;  2LOQ A;  4FIP B;  3V03 A;  2QM6 A;  4N0F D;  5IJE A;  3KIK A;  4IW1 A;  4ZBQ A;  1KXP D;  3H3A A;  1HK3 A;  2I30 A;  2AJE A;  3MHH B;  3CX9 A;  4LB9 A;  3JRY A;  4F5U A;  2EFH A;  1AO6 A;  5GIP A;  2BXQ A;  1HK5 A;  2ROH A;  2BXE A;  4Z9O A;  5HOZ A;  2YDF A;  4TQ0 A;  1E7B A;  2EFC A;  3LU7 A;  4GDX A;  3W1S A;  1VZS A;  4HGK A;  4PO0 A;  5BPK A;  2DG5 A;  4EMX A;  2XVW A;  3GQU A;  4L9Q A;  1E78 A;  2QMC A;  3UIV A;  4OTU A;  2XW1 A;  2XSI A;  4MBE C;  3FNM A;  4E99 A;  4ZUX V;  1BJ5 A;  1KW2 A;  3FWB C;  2BXF A;  4L9K A;  4L8U A;  4NAW B;  5GIN A;  2BXL A;  1MIW A;  3ICX A;  1E7I A;  3LU6 A;  4ZBK A;  3G9K D;  2DYO A;  2E0X A;  2BXH A;  3FWC C;  4TQ1 A;  1BKE A;  2E0Y A;  2OT3 A;  2KBZ A;  3JQZ A;  2V36 A;  4W4U B;  4ZCG A;  3WHQ A;  3V09 A;  2CKX A;  2EFE A;  3PLA A;  2DYM A;  3WHS A;  4ZBR A;  5IIH A;  1VFI A;  4K2C A;  4S1Y A;  4BKE A;  2NNW A;  1LNS A;  4IW2 A;  5FUO A;  3B9M A;  4LB2 A;  4GDK B;  1JNB A;  2BXA A;  5IJF A;  1E7F A;  2Z8I A;  3TDL A;  3NMU A;  2I2Z A;  3GQX A;  3SIU B;  1H5W A;  1MA9 A;  1E7C A;  2BXO A;  2OZB B;  5DBY A;  3A73 A;  5IJ5 A;  3NVM A;  5IIX A;  2BXP A;  5GIO A;  2BXD A;  2BX8 A;  1J78 A;  1HA2 A;  1O9X A;  2Z8J A;  5GHK A;  4LA0 A;  4GG2 A;  3VQI A;  4LUF A;  4G04 A;  3WHR A;  1E7G A;  1N5U A;  2EFD A;  1GNI A;  2VUE A;  4Z69 A;  4OT2 A;  1GNJ A;  1MIY A;  2BXM A;  4G03 A;  1E7A A;  1E7H A;  4F5T A;  1FOU A;  2XMO A;  4F5S A;  3SQJ A;  3SIV B;  2XVV A;  2XVU A;  2VDB A;  2XVQ A;  4BY9 C;  4N3Z A;  4M70 B;  4DHX B;  3H37 A;  3V08 A;  4F5V A;  3B9L A;  1NT2 B;  4C31 B;  2DBU A;  3NVK A;  1TXU A;  2Z8K A;  2NQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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