1FOUA

Connector protein from bacteriophage phi29
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
275
structure length
257
Chain Sequence
SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFKLQTDEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords UPPER COLLAR PROTEIN
publication title Structure of the bacteriophage phi29 DNA packaging motor.
pubmed doi rcsb
source organism Bacillus phage phi29
total genus 57
structure length 257
sequence length 275
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2000-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05352 Phage_connector Phage Connector (GP10)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.30 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 1fouA01
2.40.500.10 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein) 1fouA02
3.30.1350.20 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3 1fouA03
1IJGA 1H5WA 1FOUA 1JNBA
chains in the Genus database with same CATH superfamily
4G03A 5IJ5A 1BJ5A 2DG5A 4GUNA 1BM0A 1NT2B 5IFOA 2P4KA 1I08A 1JXXA 2KWFA 3UE7B 4OR0A 4N0UD 2BXMA 2BXAA 5IIHA 1KW2A 4LA0A 3B9MA 2LOQA 2BXIA 1J78A 3KJLA 2ADPA 1BHPA 4F6EA 3SIUB 1E7FA 2FD7A 2ADQB 3DC5A 1MMMA 2BXOA 2DBWA 1HK2A 2VUFA 4PO0A 1MA1A 4F5SA 1N5UA 4IW1A 1MUHA 5IIUA 1AVMA 3TDLA 1VZSA 1JXTA 5ID7A 2XVUA 4LUFA 4GDLB 4BY9C 4WA6B 1AP6A 1FOUA 2BXKA 1HK1A 1IDSA 4FFKA 1I0HA 1IX9A 4F5VA 4G04A 1TF0A 3GQUA 2EFDA 1CNRA 4GG2A 3NVMA 2OT3A 1AR4A 1CRNA 1ZTEA 1GN3A 2NQOA 1MIYA 2VUEA 3C3TA 1ZSPA 5ID9A 3MDSA 3PLAA 3GA9L 1VEWA 5DBYA 1HA2A 2DYMA 3TJTA 1HK3A 3ICXA 4X9QA 2V9BA 1MIWA 2XVQA 4ZUXV 1EJGA 2EYDA 2AGHB 4YIOA 2CKXA 4S1YA 2LQIA 4JK4A 3BPJA 1CBNA 3NMUA 1JMNA 4C31B 3LU8A 2XVWA 1MNGA 1LNSA 2DBUA 1JNBA 1JXYA 1SB0A 1MM8A 4F5UA 4N0FD 2QKAA 1WB7A 2GUTA 1IXBA 1MUSA 2FD9A 2BXCA 1EM1A 4ZBRA 1D5NA 5GIOA 1B06A 3B9LA 5GIPA 1QNMA 1MSDA 1XILA 2E0YA 4TQ0A 1JMPA 1PM9A 2XVVA 4OTTA 2QHBA 4JZGA 2Z8JA 3WHRA 4ZC6A 1ZUQA 3WHQA 4N3ZA 3H37A 1YV8A 2EFCA 1LOTA 1WUWA 3CEIA 3AK3A 1KKCA 1E7BA 1N0JA 2I2ZA 2BXLA 2LXSA 5HOZA 1J7EA 3A73A 1XDCA 3QVNA 1CCMA 3LSUA 2XSIA 2KBZA 2QMCA 1PL4A 2XW0A 1JXWA 4FJCB 1KXPD 3WHSA 2VDBA 3LU6A 1MIVA 3VQIA 1GNJA 3SZSA 4DHXB 3DC6A 4D7XA 4OTUA 5B5TA 3LU7A 4OT2A 2BXFA 1GN4A 3CX9A 1H5WA 4NAWB 2CDYA 4ZBKA 1XUQA 2CE4A 4Z9OA 3NVIA 3NVKA 1E7AA 4K2CA 4GDXA 1MA9A 1OKHA 5IJEA 2DBXA 4ZBQA 3K9SA 1AB1A 2I30A 3BFRA 4FK5B 4J2VA 1P7GA 5IJFA 1XREA 3W1SA 3RN4A 4GDKB 4ZCGA 5GINA 2OZBB 2AJEA 1GNIA 4E4EA 4BR6A 4L8UA 2BXQA 4BKEA 4FIPB 4I9OA 2BX8A 3U7TA 5D7GA 2XW1A 2K0NA 1JA8A 1E7GA 3SQJA 1VARA 1YVAA 1HK4A 2BXBA 3AK2A 4HGMB 1HK5A 5IIXA 1SZXA 3AK1A 2BXEA 3MHSB 3FWCC 4L9QA 2LXTA 4YIPA 2QM6A 3EVKA 1IJGA 4JYYA 4LB9A 1CCNA 3UIVA 3V09A 1UORA 2QKCA 1EN5A 3NIRA 1E7HA 2Z8KA 3KIKA 2XMOA 5BPKA 4W4UB 2EFEA 4MBEC 1E7EA 1H9ZA 1AO6A 4JZ2A 1GN6A 2E0XA 2BXNA 3FWBC 4DM0A 2PLHA 3G9KD 4IW2A 3C3SA 1JXUA 1TXUA 2EFHA 3ECPA 2ROHA 4Z69A 4FC1A 1E78A 5FUOA 1AR5A 3SIVB 5A9GA 4F5TA 2Z8IA 3A75A 4G01A 3M99C 1Y67A 4HGKA 3KKYA 1EN6A 2BXPA 1LUVA 2EYCA 1BS3A 1O9XA 3OT7A 3JRYA 2LQHA 4LUHA 3JQZA 3GQXA 2BXHA 2YDFA 4LB2A 1ED0A 2V36A 2NNWA 4C7UA 2AW9A 2DYOA 5AG2A 2EYBA 4K71A 4E99A 1LUWA 1ORLA 3FNMA 1KDXA 2GDSA 5DQFA 1GN2A 3KDRA 1CXRA 1BSMA 4L9KA 1EN4A 4EMXA 2BXDA 2BXGA 3MHHB 1N0NA 2EYAA 2RCVA 1WB8A 1BT8A 1E7CA 3H3AA 1JR9A 1AP5A 1NBLA 1VFIA 5GHKA 4M70B 2JUHA 3V03A 1BKEA 1ZLZA 1E7IA 4TQ1A 3C8PA 3V08A
chains in the Genus database with same CATH topology
2ROHA 4G03A 1E7AA 5IJ5A 4K2CA 1BJ5A 4GDXA 4JK4A 4Z69A 1MA9A 1E78A 3NMUA 2DG5A 5FUOA 4C31B 5IJEA 2DBXA 3LU8A 2XVWA 1BM0A 1LNSA 4ZBQA 3SIVB 3NVKA 1NT2B 5IFOA 2DBUA 1JNBA 2I30A 4F5TA 4F5UA 4FK5B 4N0FD 4J2VA 5IJFA 2Z8IA 3A75A 4G01A 3M99C 4HGKA 3W1SA 4GDKB 4ZCGA 5GINA 4OR0A 2OZBB 2AJEA 2BXCA 1GNIA 2BXPA 4N0UD 2BXMA 2BXAA 4ZBRA 5IIHA 5GIOA 4L8UA 2BXQA 1KW2A 4BKEA 4FIPB 4LA0A 3B9MA 2LOQA 3B9LA 5GIPA 2BXIA 1O9XA 1J78A 3KJLA 3JRYA 2BX8A 3SIUB 1E7FA 5D7GA 2XW1A 4LUHA 2E0YA 1E7GA 3JQZA 4TQ0A 3GQXA 2BXOA 3SQJA 2BXHA 2DBWA 2YDFA 4LB2A 2XVVA 4OTTA 1HK2A 1HK4A 2BXBA 2V36A 2VUFA 2NNWA 2QHBA 2DYOA 1HK5A 4HGMB 4PO0A 5IIXA 2BXEA 3MHSB 3FWCC 4F5SA 4L9QA 1N5UA 2QM6A 4IW1A 4K71A 5IIUA 2Z8JA 1IJGA 3WHRA 4E99A 3TDLA 1VZSA 5ID7A 4LB9A 4ZC6A 2XVUA 3FNMA 3WHQA 4N3ZA 3H37A 3UIVA 4LUFA 2EFCA 3V09A 1UORA 1LOTA 4GDLB 4BY9C 4WA6B 1FOUA 5DQFA 2BXKA 1HK1A 1E7HA 2Z8KA 3KIKA 1E7BA 2XMOA 2I2ZA 2BXLA 5HOZA 5BPKA 4W4UB 1J7EA 2EFEA 3A73A 4L9KA 4MBEC 1E7EA 4F5VA 1H9ZA 4G04A 4EMXA 2BXDA 1TF0A 2BXGA 3GQUA 1AO6A 2XSIA 2KBZA 2EFDA 2E0XA 2QMCA 3MHHB 4GG2A 2XW0A 3NVMA 2OT3A 4FJCB 1KXPD 3WHSA 2VDBA 3LU6A 2NQOA 2BXNA 1MIVA 3VQIA 1GNJA 1MIYA 2VUEA 3FWBC 4DHXB 5ID9A 1E7CA 3G9KD 3H3AA 4OTUA 3GA9L 5B5TA 3PLAA 5DBYA 3LU7A 1HA2A 4OT2A 2BXFA 2DYMA 4IW2A 3CX9A 1H5WA 4NAWB 1VFIA 5GHKA 4M70B 1HK3A 2JUHA 3ICXA 1TXUA 2EFHA 4ZBKA 1MIWA 2XVQA 3V03A 1BKEA 4ZUXV 1E7IA 4TQ1A 4Z9OA 3NVIA 2CKXA 3V08A 4S1YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IJG A;  1H5W A;  1FOU A;  1JNB A; 
#chains in the Genus database with same CATH topology
 4G03 A;  5IJ5 A;  1BJ5 A;  2DG5 A;  4GUN A;  1BM0 A;  1NT2 B;  5IFO A;  2P4K A;  1I08 A;  1JXX A;  2KWF A;  3UE7 B;  4OR0 A;  4N0U D;  2BXM A;  2BXA A;  5IIH A;  1KW2 A;  4LA0 A;  3B9M A;  2LOQ A;  2BXI A;  1J78 A;  3KJL A;  2ADP A;  1BHP A;  4F6E A;  3SIU B;  1E7F A;  2FD7 A;  2ADQ B;  3DC5 A;  1MMM A;  2BXO A;  2DBW A;  1HK2 A;  2VUF A;  4PO0 A;  1MA1 A;  4F5S A;  1N5U A;  4IW1 A;  1MUH A;  5IIU A;  1AVM A;  3TDL A;  1VZS A;  1JXT A;  5ID7 A;  2XVU A;  4LUF A;  4GDL B;  4BY9 C;  4WA6 B;  1AP6 A;  1FOU A;  2BXK A;  1HK1 A;  1IDS A;  4FFK A;  1I0H A;  1IX9 A;  4F5V A;  4G04 A;  1TF0 A;  3GQU A;  2EFD A;  1CNR A;  4GG2 A;  3NVM A;  2OT3 A;  1AR4 A;  1CRN A;  1ZTE A;  1GN3 A;  2NQO A;  1MIY A;  2VUE A;  3C3T A;  1ZSP A;  5ID9 A;  3MDS A;  3PLA A;  3GA9 L;  1VEW A;  5DBY A;  1HA2 A;  2DYM A;  3TJT A;  1HK3 A;  3ICX A;  4X9Q A;  2V9B A;  1MIW A;  2XVQ A;  4ZUX V;  1EJG A;  2EYD A;  2AGH B;  4YIO A;  2CKX A;  4S1Y A;  2LQI A;  4JK4 A;  3BPJ A;  1CBN A;  3NMU A;  1JMN A;  4C31 B;  3LU8 A;  2XVW A;  1MNG A;  1LNS A;  2DBU A;  1JNB A;  1JXY A;  1SB0 A;  1MM8 A;  4F5U A;  4N0F D;  2QKA A;  1WB7 A;  2GUT A;  1IXB A;  1MUS A;  2FD9 A;  2BXC A;  1EM1 A;  4ZBR A;  1D5N A;  5GIO A;  1B06 A;  3B9L A;  5GIP A;  1QNM A;  1MSD A;  1XIL A;  2E0Y A;  4TQ0 A;  1JMP A;  1PM9 A;  2XVV A;  4OTT A;  2QHB A;  4JZG A;  2Z8J A;  3WHR A;  4ZC6 A;  1ZUQ A;  3WHQ A;  4N3Z A;  3H37 A;  1YV8 A;  2EFC A;  1LOT A;  1WUW A;  3CEI A;  3AK3 A;  1KKC A;  1E7B A;  1N0J A;  2I2Z A;  2BXL A;  2LXS A;  5HOZ A;  1J7E A;  3A73 A;  1XDC A;  3QVN A;  1CCM A;  3LSU A;  2XSI A;  2KBZ A;  2QMC A;  1PL4 A;  2XW0 A;  1JXW A;  4FJC B;  1KXP D;  3WHS A;  2VDB A;  3LU6 A;  1MIV A;  3VQI A;  1GNJ A;  3SZS A;  4DHX B;  3DC6 A;  4D7X A;  4OTU A;  5B5T A;  3LU7 A;  4OT2 A;  2BXF A;  1GN4 A;  3CX9 A;  1H5W A;  4NAW B;  2CDY A;  4ZBK A;  1XUQ A;  2CE4 A;  4Z9O A;  3NVI A;  3NVK A;  1E7A A;  4K2C A;  4GDX A;  1MA9 A;  1OKH A;  5IJE A;  2DBX A;  4ZBQ A;  3K9S A;  1AB1 A;  2I30 A;  3BFR A;  4FK5 B;  4J2V A;  1P7G A;  5IJF A;  1XRE A;  3W1S A;  3RN4 A;  4GDK B;  4ZCG A;  5GIN A;  2OZB B;  2AJE A;  1GNI A;  4E4E A;  4BR6 A;  4L8U A;  2BXQ A;  4BKE A;  4FIP B;  4I9O A;  2BX8 A;  3U7T A;  5D7G A;  2XW1 A;  2K0N A;  1JA8 A;  1E7G A;  3SQJ A;  1VAR A;  1YVA A;  1HK4 A;  2BXB A;  3AK2 A;  4HGM B;  1HK5 A;  5IIX A;  1SZX A;  3AK1 A;  2BXE A;  3MHS B;  3FWC C;  4L9Q A;  2LXT A;  4YIP A;  2QM6 A;  3EVK A;  1IJG A;  4JYY A;  4LB9 A;  1CCN A;  3UIV A;  3V09 A;  1UOR A;  2QKC A;  1EN5 A;  3NIR A;  1E7H A;  2Z8K A;  3KIK A;  2XMO A;  5BPK A;  4W4U B;  2EFE A;  4MBE C;  1E7E A;  1H9Z A;  1AO6 A;  4JZ2 A;  1GN6 A;  2E0X A;  2BXN A;  3FWB C;  4DM0 A;  2PLH A;  3G9K D;  4IW2 A;  3C3S A;  1JXU A;  1TXU A;  2EFH A;  3ECP A;  2ROH A;  4Z69 A;  4FC1 A;  1E78 A;  5FUO A;  1AR5 A;  3SIV B;  5A9G A;  4F5T A;  2Z8I A;  3A75 A;  4G01 A;  3M99 C;  1Y67 A;  4HGK A;  3KKY A;  1EN6 A;  2BXP A;  1LUV A;  2EYC A;  1BS3 A;  1O9X A;  3OT7 A;  3JRY A;  2LQH A;  4LUH A;  3JQZ A;  3GQX A;  2BXH A;  2YDF A;  4LB2 A;  1ED0 A;  2V36 A;  2NNW A;  4C7U A;  2AW9 A;  2DYO A;  5AG2 A;  2EYB A;  4K71 A;  4E99 A;  1LUW A;  1ORL A;  3FNM A;  1KDX A;  2GDS A;  5DQF A;  1GN2 A;  3KDR A;  1CXR A;  1BSM A;  4L9K A;  1EN4 A;  4EMX A;  2BXD A;  2BXG A;  3MHH B;  1N0N A;  2EYA A;  2RCV A;  1WB8 A;  1BT8 A;  1E7C A;  3H3A A;  1JR9 A;  1AP5 A;  1NBL A;  1VFI A;  5GHK A;  4M70 B;  2JUH A;  3V03 A;  1BKE A;  1ZLZ A;  1E7I A;  4TQ1 A;  3C8P A;  3V08 A; 
#chains in the Genus database with same CATH homology
 2ROH A;  4G03 A;  1E7A A;  5IJ5 A;  4K2C A;  1BJ5 A;  4GDX A;  4JK4 A;  4Z69 A;  1MA9 A;  1E78 A;  3NMU A;  2DG5 A;  5FUO A;  4C31 B;  5IJE A;  2DBX A;  3LU8 A;  2XVW A;  1BM0 A;  1LNS A;  4ZBQ A;  3SIV B;  3NVK A;  1NT2 B;  5IFO A;  2DBU A;  1JNB A;  2I30 A;  4F5T A;  4F5U A;  4FK5 B;  4N0F D;  4J2V A;  5IJF A;  2Z8I A;  3A75 A;  4G01 A;  3M99 C;  4HGK A;  3W1S A;  4GDK B;  4ZCG A;  5GIN A;  4OR0 A;  2OZB B;  2AJE A;  2BXC A;  1GNI A;  2BXP A;  4N0U D;  2BXM A;  2BXA A;  4ZBR A;  5IIH A;  5GIO A;  4L8U A;  2BXQ A;  1KW2 A;  4BKE A;  4FIP B;  4LA0 A;  3B9M A;  2LOQ A;  3B9L A;  5GIP A;  2BXI A;  1O9X A;  1J78 A;  3KJL A;  3JRY A;  2BX8 A;  3SIU B;  1E7F A;  5D7G A;  2XW1 A;  4LUH A;  2E0Y A;  1E7G A;  3JQZ A;  4TQ0 A;  3GQX A;  2BXO A;  3SQJ A;  2BXH A;  2DBW A;  2YDF A;  4LB2 A;  2XVV A;  4OTT A;  1HK2 A;  1HK4 A;  2BXB A;  2V36 A;  2VUF A;  2NNW A;  2QHB A;  2DYO A;  1HK5 A;  4HGM B;  4PO0 A;  5IIX A;  2BXE A;  3MHS B;  3FWC C;  4F5S A;  4L9Q A;  1N5U A;  2QM6 A;  4IW1 A;  4K71 A;  5IIU A;  2Z8J A;  1IJG A;  3WHR A;  4E99 A;  3TDL A;  1VZS A;  5ID7 A;  4LB9 A;  4ZC6 A;  2XVU A;  3FNM A;  3WHQ A;  4N3Z A;  3H37 A;  3UIV A;  4LUF A;  2EFC A;  3V09 A;  1UOR A;  1LOT A;  4GDL B;  4BY9 C;  4WA6 B;  1FOU A;  5DQF A;  2BXK A;  1HK1 A;  1E7H A;  2Z8K A;  3KIK A;  1E7B A;  2XMO A;  2I2Z A;  2BXL A;  5HOZ A;  5BPK A;  4W4U B;  1J7E A;  2EFE A;  3A73 A;  4L9K A;  4MBE C;  1E7E A;  4F5V A;  1H9Z A;  4G04 A;  4EMX A;  2BXD A;  1TF0 A;  2BXG A;  3GQU A;  1AO6 A;  2XSI A;  2KBZ A;  2EFD A;  2E0X A;  2QMC A;  3MHH B;  4GG2 A;  2XW0 A;  3NVM A;  2OT3 A;  4FJC B;  1KXP D;  3WHS A;  2VDB A;  3LU6 A;  2NQO A;  2BXN A;  1MIV A;  3VQI A;  1GNJ A;  1MIY A;  2VUE A;  3FWB C;  4DHX B;  5ID9 A;  1E7C A;  3G9K D;  3H3A A;  4OTU A;  3GA9 L;  5B5T A;  3PLA A;  5DBY A;  3LU7 A;  1HA2 A;  4OT2 A;  2BXF A;  2DYM A;  4IW2 A;  3CX9 A;  1H5W A;  4NAW B;  1VFI A;  5GHK A;  4M70 B;  1HK3 A;  2JUH A;  3ICX A;  1TXU A;  2EFH A;  4ZBK A;  1MIW A;  2XVQ A;  3V03 A;  1BKE A;  4ZUX V;  1E7I A;  4TQ1 A;  4Z9O A;  3NVI A;  2CKX A;  3V08 A;  4S1Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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