1OKHA

Viscotoxin a3 from viscum album l.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Toxin
molecule keywords VISCOTOXIN A3
publication title Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
pubmed doi rcsb
total genus 12
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1okhA00
1CCMA 1JMNA 2EYCA 2FD7A 1CRNA 1EJGA 1ED0A 1CBNA 1AB1A 4FC1A 2FD9A 1YV8A 1JXWA 3SZSA 1NBLA 2EYAA 1JXUA 3U7TA 2EYDA 1CXRA 1OKHA 1WUWA 1JXTA 1CCNA 1ORLA 2EYBA 1JXYA 3NIRA 1JMPA 3UE7B 2V9BA 3C8PA 1YVAA 1JXXA 1CNRA 1BHPA 2PLHA
chains in the Genus database with same CATH superfamily
1H5WA 1IJGA 1CCMA 1JMNA 2EYCA 2FD7A 1CRNA 1EJGA 1ED0A 1CBNA 1AB1A 4FC1A 1FOUA 2FD9A 1YV8A 1JXWA 3SZSA 1NBLA 2EYAA 1JXUA 3U7TA 2EYDA 1CXRA 1OKHA 1WUWA 1JXTA 1CCNA 1ORLA 2EYBA 1JXYA 3NIRA 1JMPA 3UE7B 2V9BA 3C8PA 1YVAA 1JXXA 1CNRA 1BHPA 2PLHA 1JNBA
chains in the Genus database with same CATH topology
1CCMA 1JMNA 2EYCA 2FD7A 1CRNA 1EJGA 1ED0A 1CBNA 1AB1A 4FC1A 2FD9A 1YV8A 1JXWA 3SZSA 1NBLA 2EYAA 1JXUA 3U7TA 2EYDA 1CXRA 1OKHA 1WUWA 1JXTA 1CCNA 1ORLA 2EYBA 1JXYA 3NIRA 1JMPA 3UE7B 2V9BA 3C8PA 1YVAA 1JXXA 1CNRA 1BHPA 2PLHA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1CCM A;  1JMN A;  2EYC A;  2FD7 A;  1CRN A;  1EJG A;  1ED0 A;  1CBN A;  1AB1 A;  4FC1 A;  2FD9 A;  1YV8 A;  1JXW A;  3SZS A;  1NBL A;  2EYA A;  1JXU A;  3U7T A;  2EYD A;  1CXR A;  1OKH A;  1WUW A;  1JXT A;  1CCN A;  1ORL A;  2EYB A;  1JXY A;  3NIR A;  1JMP A;  3UE7 B;  2V9B A;  3C8P A;  1YVA A;  1JXX A;  1CNR A;  1BHP A;  2PLH A; 
#chains in the Genus database with same CATH topology
 1H5W A;  1IJG A;  1CCM A;  1JMN A;  2EYC A;  2FD7 A;  1CRN A;  1EJG A;  1ED0 A;  1CBN A;  1AB1 A;  4FC1 A;  1FOU A;  2FD9 A;  1YV8 A;  1JXW A;  3SZS A;  1NBL A;  2EYA A;  1JXU A;  3U7T A;  2EYD A;  1CXR A;  1OKH A;  1WUW A;  1JXT A;  1CCN A;  1ORL A;  2EYB A;  1JXY A;  3NIR A;  1JMP A;  3UE7 B;  2V9B A;  3C8P A;  1YVA A;  1JXX A;  1CNR A;  1BHP A;  2PLH A;  1JNB A; 
#chains in the Genus database with same CATH homology
 1CCM A;  1JMN A;  2EYC A;  2FD7 A;  1CRN A;  1EJG A;  1ED0 A;  1CBN A;  1AB1 A;  4FC1 A;  2FD9 A;  1YV8 A;  1JXW A;  3SZS A;  1NBL A;  2EYA A;  1JXU A;  3U7T A;  2EYD A;  1CXR A;  1OKH A;  1WUW A;  1JXT A;  1CCN A;  1ORL A;  2EYB A;  1JXY A;  3NIR A;  1JMP A;  3UE7 B;  2V9B A;  3C8P A;  1YVA A;  1JXX A;  1CNR A;  1BHP A;  2PLH A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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