1JOTA

Structure of the lectin mpa complexed with t-antigen disaccharide
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)TVIa1 (59-62)TIV3 (60-63)TI2 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV5 (120-123)S10 (112-120)S4 (37-40)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Lectin
publication title Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
pubmed doi rcsb
molecule keywords AGGLUTININ
total genus 27
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 1997-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1jotA00
1C3MA 1WS5C 1J4UA 4GX7A 3APAA 3LL0A 1VBPA 1XXRA 1UGXA 4MQ0A 2HYQA 3LL2A 3MITA 1UH1A 4AKCA 2GUXA 3LLZA 3WOBA 4PITA 2GUEA 4AKBA 1UGWA 2NUOA 1J4SA 1JACA 3VY6A 1VBOA 4R6NA 4PIUA 4WOGA 5EXGA 1UGYA 2BN0A 2BMYA 1ZGSA 3R51A 1J4TA 3R52A 5BN6E 1PXDA 1TP8A 3LKYA 3VZGA 4R6OA 1WS4A 4PIKA 1ZGRA 2JZ4A 3AQGA 1UGWC 3P8SA 3VZEA 1OUWA 1TOQA 3WOCA 3VY7A 2GUDA 1XXQA 4R6RA 4AKDA 1JOTA 5J4TA 3LL1A 4PIFA 3LLYA 3MIVA 1UGYC 1XEZA 1C3NA 4R6QA 3LM1A 4AK4A 3VZFA 1M26A 2BMZA 2GTYA 5J51A 2HYRA 1X1VA 5J4XA 4R6PA 5JM1A 1KUJA 5AV7A 3O44A 1WS4C 1WS5A 4DDNA 1UH0A 2GUCA 3MIUA 2NU5A 1C3KA 1KU8A 5J50A 3R50A
chains in the Genus database with same CATH superfamily
1C3MA 1WS5C 1CIYA 1J4UA 1I5PA 4GX7A 3APAA 1DLCA 3LL0A 1VBPA 4QX3A 1XXRA 1UGXA 4ARXA 4ARYA 4MQ0A 2HYQA 3LL2A 1JI6A 3MITA 1UH1A 4AKCA 2GUXA 3LLZA 3WOBA 4PITA 2GUEA 4AKBA 1UGWA 2NUOA 1J4SA 1JACA 4MOAA 3VY6A 1VBOA 4R6NA 4PIUA 4D8MA 2C9KA 4WOGA 5EXGA 1VMOA 3TOWA 4QX2A 1UGYA 2BN0A 4QX1A 2BMYA 1ZGSA 3R51A 1J4TA 4QX0A 3R52A 5BN6E 1PXDA 1TP8A 3LKYA 3VZGA 4R6OA 1WS4A 4PIKA 1ZGRA 3EB7A 2JZ4A 3AQGA 1UGWC 3P8SA 3VZEA 1OUWA 1TOQA 3WOCA 3VY7A 1W99A 2GUDA 1XXQA 4R6RA 4AKDA 1JOTA 5J4TA 3LL1A 4PIFA 3LLYA 3MIVA 1UGYC 1XEZA 1C3NA 4R6QA 3LM1A 4AK4A 3VZFA 1M26A 2BMZA 2GTYA 5J51A 2HYRA 1X1VA 5J4XA 4R6PA 5JM1A 1KUJA 5AV7A 3O44A 1WS4C 4W8JA 1WS5A 4DDNA 1UH0A 2GUCA 3MIUA 2NU5A 2QP2A 1C3KA 1KU8A 5J50A 3R50A
chains in the Genus database with same CATH topology
1C3MA 1WS5C 1J4UA 4GX7A 3APAA 3LL0A 1VBPA 1XXRA 1UGXA 4MQ0A 2HYQA 3LL2A 3MITA 1UH1A 4AKCA 2GUXA 3LLZA 3WOBA 4PITA 2GUEA 4AKBA 1UGWA 2NUOA 1J4SA 1JACA 3VY6A 1VBOA 4R6NA 4PIUA 4WOGA 5EXGA 1UGYA 2BN0A 2BMYA 1ZGSA 3R51A 1J4TA 3R52A 5BN6E 1PXDA 1TP8A 3LKYA 3VZGA 4R6OA 1WS4A 4PIKA 1ZGRA 2JZ4A 3AQGA 1UGWC 3P8SA 3VZEA 1OUWA 1TOQA 3WOCA 3VY7A 2GUDA 1XXQA 4R6RA 4AKDA 1JOTA 5J4TA 3LL1A 4PIFA 3LLYA 3MIVA 1UGYC 1XEZA 1C3NA 4R6QA 3LM1A 4AK4A 3VZFA 1M26A 2BMZA 2GTYA 5J51A 2HYRA 1X1VA 5J4XA 4R6PA 5JM1A 1KUJA 5AV7A 3O44A 1WS4C 1WS5A 4DDNA 1UH0A 2GUCA 3MIUA 2NU5A 1C3KA 1KU8A 5J50A 3R50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3M A;  1WS5 C;  1J4U A;  4GX7 A;  3APA A;  3LL0 A;  1VBP A;  1XXR A;  1UGX A;  4MQ0 A;  2HYQ A;  3LL2 A;  3MIT A;  1UH1 A;  4AKC A;  2GUX A;  3LLZ A;  3WOB A;  4PIT A;  2GUE A;  4AKB A;  1UGW A;  2NUO A;  1J4S A;  1JAC A;  3VY6 A;  1VBO A;  4R6N A;  4PIU A;  4WOG A;  5EXG A;  1UGY A;  2BN0 A;  2BMY A;  1ZGS A;  3R51 A;  1J4T A;  3R52 A;  5BN6 E;  1PXD A;  1TP8 A;  3LKY A;  3VZG A;  4R6O A;  1WS4 A;  4PIK A;  1ZGR A;  2JZ4 A;  3AQG A;  1UGW C;  3P8S A;  3VZE A;  1OUW A;  1TOQ A;  3WOC A;  3VY7 A;  2GUD A;  1XXQ A;  4R6R A;  4AKD A;  1JOT A;  5J4T A;  3LL1 A;  4PIF A;  3LLY A;  3MIV A;  1UGY C;  1XEZ A;  1C3N A;  4R6Q A;  3LM1 A;  4AK4 A;  3VZF A;  1M26 A;  2BMZ A;  2GTY A;  5J51 A;  2HYR A;  1X1V A;  5J4X A;  4R6P A;  5JM1 A;  1KUJ A;  5AV7 A;  3O44 A;  1WS4 C;  1WS5 A;  4DDN A;  1UH0 A;  2GUC A;  3MIU A;  2NU5 A;  1C3K A;  1KU8 A;  5J50 A;  3R50 A; 
#chains in the Genus database with same CATH topology
 1C3M A;  1WS5 C;  1CIY A;  1J4U A;  1I5P A;  4GX7 A;  3APA A;  1DLC A;  3LL0 A;  1VBP A;  4QX3 A;  1XXR A;  1UGX A;  4ARX A;  4ARY A;  4MQ0 A;  2HYQ A;  3LL2 A;  1JI6 A;  3MIT A;  1UH1 A;  4AKC A;  2GUX A;  3LLZ A;  3WOB A;  4PIT A;  2GUE A;  4AKB A;  1UGW A;  2NUO A;  1J4S A;  1JAC A;  4MOA A;  3VY6 A;  1VBO A;  4R6N A;  4PIU A;  4D8M A;  2C9K A;  4WOG A;  5EXG A;  1VMO A;  3TOW A;  4QX2 A;  1UGY A;  2BN0 A;  4QX1 A;  2BMY A;  1ZGS A;  3R51 A;  1J4T A;  4QX0 A;  3R52 A;  5BN6 E;  1PXD A;  1TP8 A;  3LKY A;  3VZG A;  4R6O A;  1WS4 A;  4PIK A;  1ZGR A;  3EB7 A;  2JZ4 A;  3AQG A;  1UGW C;  3P8S A;  3VZE A;  1OUW A;  1TOQ A;  3WOC A;  3VY7 A;  1W99 A;  2GUD A;  1XXQ A;  4R6R A;  4AKD A;  1JOT A;  5J4T A;  3LL1 A;  4PIF A;  3LLY A;  3MIV A;  1UGY C;  1XEZ A;  1C3N A;  4R6Q A;  3LM1 A;  4AK4 A;  3VZF A;  1M26 A;  2BMZ A;  2GTY A;  5J51 A;  2HYR A;  1X1V A;  5J4X A;  4R6P A;  5JM1 A;  1KUJ A;  5AV7 A;  3O44 A;  1WS4 C;  4W8J A;  1WS5 A;  4DDN A;  1UH0 A;  2GUC A;  3MIU A;  2NU5 A;  2QP2 A;  1C3K A;  1KU8 A;  5J50 A;  3R50 A; 
#chains in the Genus database with same CATH homology
 1C3M A;  1WS5 C;  1J4U A;  4GX7 A;  3APA A;  3LL0 A;  1VBP A;  1XXR A;  1UGX A;  4MQ0 A;  2HYQ A;  3LL2 A;  3MIT A;  1UH1 A;  4AKC A;  2GUX A;  3LLZ A;  3WOB A;  4PIT A;  2GUE A;  4AKB A;  1UGW A;  2NUO A;  1J4S A;  1JAC A;  3VY6 A;  1VBO A;  4R6N A;  4PIU A;  4WOG A;  5EXG A;  1UGY A;  2BN0 A;  2BMY A;  1ZGS A;  3R51 A;  1J4T A;  3R52 A;  5BN6 E;  1PXD A;  1TP8 A;  3LKY A;  3VZG A;  4R6O A;  1WS4 A;  4PIK A;  1ZGR A;  2JZ4 A;  3AQG A;  1UGW C;  3P8S A;  3VZE A;  1OUW A;  1TOQ A;  3WOC A;  3VY7 A;  2GUD A;  1XXQ A;  4R6R A;  4AKD A;  1JOT A;  5J4T A;  3LL1 A;  4PIF A;  3LLY A;  3MIV A;  1UGY C;  1XEZ A;  1C3N A;  4R6Q A;  3LM1 A;  4AK4 A;  3VZF A;  1M26 A;  2BMZ A;  2GTY A;  5J51 A;  2HYR A;  1X1V A;  5J4X A;  4R6P A;  5JM1 A;  1KUJ A;  5AV7 A;  3O44 A;  1WS4 C;  1WS5 A;  4DDN A;  1UH0 A;  2GUC A;  3MIU A;  2NU5 A;  1C3K A;  1KU8 A;  5J50 A;  3R50 A; 
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similar chains in the Genus database (?% sequence similarity)
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